RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 FAM27D1Q5T7N8 215 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 TRIQKQ629K1 86 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 NOXA1Q86UR1 476 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 OR2L5Q8NG80 312 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 BBS10Q8TAM1 723 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 LCN9Q8WX39 176 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 FRMD6Q96NE9 622 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 ZNF582Q96NG8 517 aaPredicted RBP15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 TIMM29Q9BSF4 260 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 FUZQ9BT04 418 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 MED20Q9H944 212 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 POLMQ9NP87 494 aaPredicted RBP15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 TAS2R7Q9NYW3 318 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 CNOT2Q9NZN8 540 aaKnown RBP15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 ADAM29Q9UKF5 820 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 CSNK1G3Q9Y6M4 447 aa15.47■□□□□ 0.07
CCDC88B-210ENST00000494566 SH3D21A4FU49 640 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 ARRDC5A6NEK1 342 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 FAM25AB3EWG3 89 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 FAM25CB3EWG5 89 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 FAM25GB3EWG6 89 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 ERVH48-1M5A8F1 160 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 SYPP08247 313 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 ZNF888P0CJ79 500 aaPredicted RBP15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 SLC16A1P53985 500 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 ERVK-21P61565 698 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 STXBP1P61764 594 aaKnown RBP15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 QPRTQ15274 297 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 SHHQ15465 462 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 SLC35F1Q5T1Q4 408 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 MFSD4BQ5TF39 518 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 FCRLBQ6BAA4 426 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 FAM111BQ6SJ93 734 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 KIF18BQ86Y91 864 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 C19orf18Q8NEA5 215 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 NUP43Q8NFH3 380 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 OR1E3Q8WZA6 343 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 DHRS1Q96LJ7 313 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 TRPV4Q9HBA0 871 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 ACAD8Q9UKU7 415 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 ALG5Q9Y673 324 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 MAU2Q9Y6X3 613 aa15.46■□□□□ 0.07
CCDC88B-210ENST00000494566 ZIC2O95409 532 aaPredicted RBP15.46■□□□□ 0.06
CCDC88B-210ENST00000494566 F3P13726 295 aa15.46■□□□□ 0.06
CCDC88B-210ENST00000494566 ZNF311Q5JNZ3 666 aa15.46■□□□□ 0.06
CCDC88B-210ENST00000494566 C12orf73Q69YU5 71 aa15.46■□□□□ 0.06
CCDC88B-210ENST00000494566 PLET1Q6UQ28 207 aa15.46■□□□□ 0.06
CCDC88B-210ENST00000494566 OR10G6Q8NH81 332 aa15.46■□□□□ 0.06
CCDC88B-210ENST00000494566 CAPN10Q9HC96 672 aa15.46■□□□□ 0.06
CCDC88B-210ENST00000494566 NDUFB11Q9NX14 153 aa15.46■□□□□ 0.06
CCDC88B-210ENST00000494566 ENOPH1Q9UHY7 261 aa15.46■□□□□ 0.06
CCDC88B-210ENST00000494566 CLCA2Q9UQC9 943 aa15.46■□□□□ 0.06
CCDC88B-210ENST00000494566 SLC9A8Q9Y2E8 581 aa15.46■□□□□ 0.06
CCDC88B-210ENST00000494566 A0A087WUU8 490 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 FAM240BA0A1B0GVZ2 78 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 PRSS38A1L453 326 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 FAM172BPA6NC97 362 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 CACNB4O00305 520 aaPredicted RBP15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 LGI1O95970 557 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 TRHRP34981 398 aaPredicted RBP15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 GIPRP48546 466 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 CSTF1Q05048 431 aaKnown RBP15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 BTBD16Q32M84 506 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 DDI2Q5TDH0 399 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 MRM1Q6IN84 353 aaKnown RBP15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 SLC48A1Q6P1K1 146 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 PRICKLE2Q7Z3G6 844 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 MARCH9Q86YJ5 346 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 OR8D4Q8NGM9 314 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 OR8J1Q8NGP2 316 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 PATE1Q8WXA2 126 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 SLC25A46Q96AG3 418 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 DACT3Q96B18 629 aaPredicted RBP15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 KCTD7Q96MP8 289 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 MTIF3Q9H2K0 278 aaKnown RBP15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 CDCP1Q9H5V8 836 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 RNF121Q9H920 327 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 MCUBQ9NWR8 336 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 CES1P1Q9UKY3 287 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 HSPB11Q9Y547 144 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 A3GALT2U3KPV4 340 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 SDK1Q7Z5N4 2213 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 MPZL2O60487 215 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 TAS2R41P59536 307 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 SIM1P81133 766 aaPredicted RBP15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 RHAGQ02094 409 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 CCNJQ5T5M9 372 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 C19orf48Q6RUI8 117 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 VN1R4Q7Z5H5 301 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 AMIGO1Q86WK6 493 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 NATD1Q8N6N6 113 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 MORN4Q8NDC4 146 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 SNAPC3Q92966 411 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 HDHD2Q9H0R4 259 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 TMEM168Q9H0V1 697 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 SLC38A1Q9H2H9 487 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 SEMA4GQ9NTN9 838 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 CHST2Q9Y4C5 530 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 WDR87Q6ZQQ6 2873 aa15.45■□□□□ 0.06
CCDC88B-210ENST00000494566 TRAV6A0A075B6T7 132 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms