RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 TMEM179BQ7Z7N9 219 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 RIMKLAQ8IXN7 391 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 TMIEQ8NEW7 156 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 YIPF6Q96EC8 236 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 APOOQ9BUR5 198 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 SLIRPQ9GZT3 109 aaKnown RBP15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 POLHQ9Y253 713 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 CA5BQ9Y2D0 317 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 TMEM202A6NGA9 273 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 PDCD5O14737 125 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 NARSO43776 548 aaKnown RBP15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 FMO6PO60774 539 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 KCNK2O95069 426 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 DRD2P14416 443 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 PRKCAP17252 672 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 CREB3L2Q70SY1 520 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 OR5M3Q8NGP4 307 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 PHOSPHO2Q8TCD6 241 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 TSEN15Q8WW01 171 aaKnown RBP15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 THAP7Q9BT49 309 aaPredicted RBP15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 UPB1Q9UBR1 384 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 EDARQ9UNE0 448 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 P2RX3P56373 397 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 TAS2R38P59533 333 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 ZNF91Q05481 1191 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 TMEM35AQ53FP2 167 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 MFSD4AQ8N468 514 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 CSNK1A1LQ8N752 337 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 BBS10Q8TAM1 723 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 ACOT12Q8WYK0 555 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 DNAJA3Q96EY1 480 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 P2RY12Q9H244 342 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 PCDHB16Q9NRJ7 776 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 SAGE1Q9NXZ1 904 aa15.38■□□□□ 0.05
CCDC88B-209ENST00000494080 TEX51A0A1B0GUA7 166 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 TRIM3O75382 744 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 SEMA4FO95754 770 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 CBLP22681 906 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 EDNRAP25101 427 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 CERS1P27544 350 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 EPHA2P29317 976 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 HBA1P69905 142 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 PIN1Q13526 163 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 PRAMEF17Q5VTA0 474 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 PEG10Q86TG7 708 aaKnown RBP15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 LRRC25Q8N386 305 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 ZNF419Q96HQ0 510 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 SLC2A4RGQ9NR83 387 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 KCNN3Q9UGI6 736 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 OSGIN1Q9UJX0 560 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 QSER1Q2KHR3 1735 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 A0A1W2PRQ8 180 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 RCBTB2O95199 551 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 PYCR1P32322 319 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 P2RY2P41231 377 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 SMCO1Q147U7 214 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 IRF4Q15306 451 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 LRRC37A5PQ49AS3 106 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 OR2G6Q5TZ20 316 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 FIGLAQ6QHK4 219 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 SLC16A12Q6ZSM3 486 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 PAQR7Q86WK9 346 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 INO80EQ8NBZ0 244 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 OR5D16Q8NGK9 328 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 EMC3Q9P0I2 261 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 J3KTA2 159 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 M0R3H8 397 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 SCO1O75880 301 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 CLEC2LP0C7M8 214 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 MMP12P39900 470 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 ELP2Q6IA86 826 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 USP53Q70EK8 1073 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 SYT14Q8NB59 555 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 ZNF784Q8NCA9 323 aaPredicted RBP15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 PROKR2Q8NFJ6 384 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 OR52P1PQ8NH57 321 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 OSTF1Q92882 214 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 IL20RAQ9UHF4 553 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 NRXN2Q9P2S2 1712 aa15.37■□□□□ 0.05
CCDC88B-209ENST00000494080 A0A1B0GTL3 188 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 ARPC5O15511 151 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 ALDOBP05062 364 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 PCGF2P35227 344 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 TAP2Q03519 686 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 ZNF33BQ06732 778 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 ADAMTS19Q8TE59 1207 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 PTCHD1Q96NR3 888 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 EXO5Q9H790 373 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 IL21Q9HBE4 155 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 TMEM184CQ9NVA4 438 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 EVA1BQ9NVM1 165 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 BTNL2Q9UIR0 455 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 TMPRSS11EQ9UL52 423 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 GPR34Q9UPC5 381 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 A0A1B0GVI7 797 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 BLOC1S5-TXNDC5H3BN57 136 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 FRS3O43559 492 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 CHMP24386 653 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 SHC2P98077 582 aa15.36■□□□□ 0.05
CCDC88B-209ENST00000494080 TAGLNQ01995 201 aaKnown RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms