RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 CFAP221Q4G0U5 840 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 TTMPQ5BVD1 217 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 XKR3Q5GH77 459 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF658Q5TYW1 1059 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CES4AQ5XG92 561 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 KRT80Q6KB66 452 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 C8orf74Q6P047 294 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ALKBH5Q6P6C2 394 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 DCLRE1AQ6PJP8 1040 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CNSTQ6PJW8 725 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 PAQR6Q6TCH4 344 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 IL27RAQ6UWB1 636 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ABRAXAS1Q6UWZ7 409 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 KDM7AQ6ZMT4 941 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 IDO2Q6ZQW0 420 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 FCRLAQ7L513 359 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ENOSF1Q7L5Y1 443 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 MIER3Q7Z3K6 550 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 GPR141Q7Z602 305 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 SLFN11Q7Z7L1 901 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 PRUNE1Q86TP1 453 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF677Q86XU0 584 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 STX12Q86Y82 276 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CROCCP3Q8IVE0 287 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 MMAAQ8IVH4 418 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 VSTM4Q8IW00 320 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 SYCE1Q8N0S2 351 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 LINC00518Q8N0U6 118 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 NUP93Q8N1F7 819 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 METTL4Q8N3J2 472 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 TCAIMQ8N3R3 496 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 RIBC1Q8N443 379 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 SPEM1Q8N4L4 309 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 TBC1D19Q8N5T2 526 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ANKFN1Q8N957 763 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 MLKLQ8NB16 471 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ATAD1Q8NBU5 361 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF680Q8NEM1 530 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 OR2L2Q8NH16 312 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 OR8K3Q8NH51 312 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 OR1L3Q8NH93 324 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ENKURQ8TC29 256 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ADAMTS16Q8TE57 1224 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 GANCQ8TET4 914 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 GRK7Q8WTQ7 553 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 APOBEC4Q8WW27 367 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CAPSLQ8WWF8 208 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ASZ1Q8WWH4 475 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 NELFBQ8WX92 580 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ROBO4Q8WZ75 1007 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 PROX1Q92786 737 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 TAF15Q92804 592 aaKnown RBP eCLIP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 MARC2Q969Z3 335 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 MED8Q96G25 268 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF274Q96GC6 653 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CAPZA3Q96KX2 299 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 IFT74Q96LB3 600 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 C10orf90Q96M02 699 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 CFAP57Q96MR6 1250 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 PRICKLE1Q96MT3 831 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 KLHL5Q96PQ7 755 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF300Q96RE9 604 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 PKP2Q99959 881 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 BCL7BQ9BQE9 202 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 DCTN5Q9BTE1 182 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ZSCAN5AQ9BUG6 496 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 TRIM62Q9BVG3 475 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ACAT2Q9BWD1 397 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 TDRD1Q9BXT4 1180 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF717Q9BY31 904 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 FRMD8P1Q9BZ68 369 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 BCL2L14Q9BZR8 327 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 SHARPINQ9H0F6 387 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 HAUS4Q9H6D7 363 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 RNF121Q9H920 327 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 LIN28AQ9H9Z2 209 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 UCK1Q9HA47 277 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 PLGRKTQ9HBL7 147 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 S100A14Q9HCY8 104 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 KCNMB3Q9NPA1 279 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 MYNNQ9NPC7 610 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 RPRD1BQ9NQG5 326 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 GSN-AS1Q9NRJ2 163 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 GLRX2Q9NS18 164 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF275Q9NSD4 429 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 IARS2Q9NSE4 1012 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 PRMT7Q9NVM4 692 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 TAS2R7Q9NYW3 318 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 STMN3Q9NZ72 180 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 MBD2Q9UBB5 411 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 DBF4Q9UBU7 674 aaPredicted RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 SPATA2Q9UM82 520 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 SNX6Q9UNH7 406 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 WDR83OSQ9Y284 106 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 STK38LQ9Y2H1 464 aa1.84□□□□□ -2.11
HMGB1-208ENST00000490788 MRPS7Q9Y2R9 242 aaKnown RBP1.84□□□□□ -2.11
HMGB1-208ENST00000490788 A0A1B0GUL6 1792 aa1.84□□□□□ -2.12
HMGB1-208ENST00000490788 UBR2Q8IWV8 1755 aa1.84□□□□□ -2.12
HMGB1-208ENST00000490788 FANCMQ8IYD8 2048 aa1.84□□□□□ -2.12
HMGB1-208ENST00000490788 WDR19Q8NEZ3 1342 aa1.84□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms