RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 MFAP2P55001 183 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 AIF1P55008 147 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 HILS1P60008 231 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 GSTO1P78417 241 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 TNFRSF17Q02223 184 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 DDX39BQ13838 428 aaKnown RBP4.18□□□□□ -1.74
UPF3B-203ENST00000478840 MESDQ14696 234 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 CHI3L2Q15782 390 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 MAPK6Q16659 721 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 VWA2Q5GFL6 755 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 ACER2Q5QJU3 275 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 ATF7IP2Q5U623 682 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 REP15Q6BDI9 236 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 ZNF613Q6PF04 617 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 GCNT7Q6ZNI0 430 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 CLDN19Q8N6F1 224 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 BHLHE23Q8NDY6 225 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 PIGCQ92535 297 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 RPL3LQ92901 407 aaKnown RBP4.18□□□□□ -1.74
UPF3B-203ENST00000478840 C18orf25Q96B23 403 aaPredicted RBP4.18□□□□□ -1.74
UPF3B-203ENST00000478840 MOCOSQ96EN8 888 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 SLC45A3Q96JT2 553 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 POM121L2Q96KW2 1035 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 C7orf34Q96L11 122 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 TMEM121Q9BTD3 319 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 NFKBIZQ9BYH8 718 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 POLR3FQ9H1D9 316 aaPredicted RBP4.18□□□□□ -1.74
UPF3B-203ENST00000478840 RNF41Q9H4P4 317 aaPredicted RBP4.18□□□□□ -1.74
UPF3B-203ENST00000478840 ABCC13Q9NSE7 274 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 UTP6Q9NYH9 597 aaKnown RBP4.18□□□□□ -1.74
UPF3B-203ENST00000478840 WWOXQ9NZC7 414 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 CTSZQ9UBR2 303 aa4.18□□□□□ -1.74
UPF3B-203ENST00000478840 IGHV3OR16-12A0A075B7B8 117 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 IGHV3-16A0A0C4DH30 117 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 XKRY2A2RUG3 117 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 ZSCAN5BA6NJL1 495 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.17□□□□□ -1.74
UPF3B-203ENST00000478840 STX7O15400 261 aaKnown RBP4.17□□□□□ -1.74
UPF3B-203ENST00000478840 SEMA4FO95754 770 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 HSD17B1P14061 328 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 RPL4P36578 427 aaKnown RBP4.17□□□□□ -1.74
UPF3B-203ENST00000478840 TAGLN2P37802 199 aaKnown RBP4.17□□□□□ -1.74
UPF3B-203ENST00000478840 BRCC3P46736 316 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 ATP4BP51164 291 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 CRIP2P52943 208 aaPredicted RBP4.17□□□□□ -1.74
UPF3B-203ENST00000478840 NTHL1P78549 312 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 MAP2K1Q02750 393 aaPredicted RBP4.17□□□□□ -1.74
UPF3B-203ENST00000478840 ZIC1Q15915 447 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 C17orf58Q2M2W7 97 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 CCDC183Q5T5S1 534 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 FAM219BQ5XKK7 198 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 TMEM225Q6GV28 225 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 FAM71F2Q6NXP2 309 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 PMF1Q6P1K2 205 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 CYS1Q717R9 158 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 LRRC75A-AS1Q8N1F1 130 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 LRRC43Q8N309 656 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 ARL14Q8N4G2 192 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 NPRL2Q8WTW4 380 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 CRYGNQ8WXF5 182 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 DNASE2BQ8WZ79 361 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 NT5C3BQ969T7 300 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 TADA1Q96BN2 335 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 TUBGCP3Q96CW5 907 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 AMDHD1Q96NU7 426 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 TGM7Q96PF1 710 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 RIT2Q99578 217 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 CCDC28BQ9BUN5 200 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 TUBB1Q9H4B7 451 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 FN3KRPQ9HA64 309 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 TM9SF3Q9HD45 589 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 AMBNQ9NP70 447 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 GNG12Q9UBI6 72 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 CTNNA3Q9UI47 895 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 BARX2Q9UMQ3 279 aaPredicted RBP4.17□□□□□ -1.74
UPF3B-203ENST00000478840 CLEC4AQ9UMR7 237 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 RPH3ALQ9UNE2 315 aa4.17□□□□□ -1.74
UPF3B-203ENST00000478840 MRPL11Q9Y3B7 192 aaKnown RBP4.17□□□□□ -1.74
UPF3B-203ENST00000478840 TRAV26-1A0A087WT03 109 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 A0A0U1RQS6 177 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 TEX48A0A1B0GUV7 120 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 FAM74A7A6NL05 159 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 NPIPA7E9PJI5 369 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 EFNA2O43921 213 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 TPST2O60704 377 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 TRIM3O75382 744 aaPredicted RBP4.16□□□□□ -1.74
UPF3B-203ENST00000478840 IGFBP1P08833 259 aaPredicted RBP4.16□□□□□ -1.74
UPF3B-203ENST00000478840 HBQ1P09105 142 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 TRIM49P0CI25 452 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 TRIM49CP0CI26 452 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 NPIPA8P0DM63 369 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 GRIA1P42261 906 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 MAGEA5P43359 124 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 CEBPDP49716 269 aaPredicted RBP4.16□□□□□ -1.74
UPF3B-203ENST00000478840 GSK3BP49841 420 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 EWSR1Q01844 656 aaKnown RBP eCLIP4.16□□□□□ -1.74
UPF3B-203ENST00000478840 ZMYND11Q15326 602 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 FAM74A3Q4VXF1 159 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 MS4A13Q5J8X5 152 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 ARMCX5Q6P1M9 558 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms