RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 ABCG2Q9UNQ0 655 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 MPDZO75970 2070 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 H0YC42 278 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 HCRTR2O43614 444 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 NKX2-2O95096 273 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 TGM6O95932 706 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 ACP2P11117 423 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 CHMP24386 653 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 GABRA3P34903 492 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 TPD52P55327 224 aaPredicted RBP12.76□□□□□ -0.37
UPF3A-204ENST00000475218 MRPS22P82650 360 aaKnown RBP12.76□□□□□ -0.37
UPF3A-204ENST00000475218 GALNTL6Q49A17 601 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 GALNT10Q86SR1 603 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 OR5M1Q8NGP8 315 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 PPCDCQ96CD2 204 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 SFXN2Q96NB2 322 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 TMEM109Q9BVC6 243 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 ROPN1BQ9BZX4 212 aaPredicted RBP12.76□□□□□ -0.37
UPF3A-204ENST00000475218 LIME1Q9H400 295 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 ROPN1Q9HAT0 212 aaPredicted RBP12.76□□□□□ -0.37
UPF3A-204ENST00000475218 Q9N2J8 555 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 FBXO34Q9NWN3 711 aa12.76□□□□□ -0.37
UPF3A-204ENST00000475218 FAM120CQ9NX05 1096 aaKnown RBP12.76□□□□□ -0.37
UPF3A-204ENST00000475218 ITPR3Q14573 2671 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 H0Y3Z8 333 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 RCBTB2O95199 551 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 UTS2O95399 124 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 IL18BPO95998 194 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 BPGMP07738 259 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 TMIGD3P0DMS9 266 aaPredicted RBP12.75□□□□□ -0.37
UPF3A-204ENST00000475218 KIR2DL3P43628 341 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 DSCR4P56555 118 aaPredicted RBP12.75□□□□□ -0.37
UPF3A-204ENST00000475218 STX5Q13190 355 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 RCAN2Q14206 197 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 DECR1Q16698 335 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 TMEM44Q2T9K0 475 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 GRAMD1BQ3KR37 738 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 EMBQ6PCB8 327 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 ENPP6Q6UWR7 440 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 TMEM200AQ86VY9 491 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 DDIASQ8IXT1 998 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 SLC16A11Q8NCK7 471 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 OR4C3Q8NH37 302 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 FBXO30Q8TB52 745 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 FAM110BQ8TC76 370 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 DUSP19Q8WTR2 217 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 WNT2BQ93097 391 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 OTUB1Q96FW1 271 aaPredicted RBP12.75□□□□□ -0.37
UPF3A-204ENST00000475218 C16orf58Q96GQ5 468 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 NPAS1Q99742 590 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 GPATCH1Q9BRR8 931 aaKnown RBP12.75□□□□□ -0.37
UPF3A-204ENST00000475218 ZNF395Q9H8N7 513 aaPredicted RBP12.75□□□□□ -0.37
UPF3A-204ENST00000475218 ACSS1Q9NUB1 689 aaPredicted RBP12.75□□□□□ -0.37
UPF3A-204ENST00000475218 SH3BP4Q9P0V3 963 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 PPP4R1LQ9P1A2 415 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 DKKL1Q9UK85 242 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 TMED5Q9Y3A6 229 aa12.75□□□□□ -0.37
UPF3A-204ENST00000475218 IGLV3-32A0A0A0MS00 114 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 TNFSF13O75888 250 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 PRPS2P11908 318 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 DNAJA1P31689 397 aaKnown RBP12.74□□□□□ -0.37
UPF3A-204ENST00000475218 SUCLG1P53597 346 aaKnown RBP12.74□□□□□ -0.37
UPF3A-204ENST00000475218 SF3B4Q15427 424 aaKnown RBP eCLIP12.74□□□□□ -0.37
UPF3A-204ENST00000475218 DUSP5Q16690 384 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 FLYWCH1Q4VC44 716 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 MFSD12Q6NUT3 480 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 GCNT2Q8N0V5 402 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 MREGQ8N565 214 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 OR7A2PQ8NGA2 310 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 OR4K17Q8NGC6 315 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 C1GALT1C1Q96EU7 318 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 RMND5BQ96G75 393 aaPredicted RBP12.74□□□□□ -0.37
UPF3A-204ENST00000475218 IQCGQ9H095 443 aaKnown RBP12.74□□□□□ -0.37
UPF3A-204ENST00000475218 ATP6V1HQ9UI12 483 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 ZNF337Q9Y3M9 751 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 NF1P21359 2839 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 OR2M5A3KFT3 312 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 PEX11AO75192 247 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 LAMP1P11279 417 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 OPRM1P35372 400 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 RFX3P48380 749 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 DGKQP52824 942 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 PRKAG1P54619 331 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 PRR5P85299 388 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 ZNF844Q08AG5 666 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 IFFO1Q0D2I5 559 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 PTGR1Q14914 329 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 BCL2A1Q16548 175 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 C6orf136Q5SQH8 315 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 AAGABQ6PD74 315 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 SPNS3Q6ZMD2 512 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 NUP43Q8NFH3 380 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 INTS12Q96CB8 462 aaKnown RBP12.74□□□□□ -0.37
UPF3A-204ENST00000475218 MTERF3Q96E29 417 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 ZBED6CLQ96FA7 236 aaPredicted RBP12.74□□□□□ -0.37
UPF3A-204ENST00000475218 SLC24A3Q9HC58 644 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 RASSF1Q9NS23 344 aa12.74□□□□□ -0.37
UPF3A-204ENST00000475218 DNAJB12Q9NXW2 375 aaKnown RBP12.74□□□□□ -0.37
UPF3A-204ENST00000475218 ZNF469Q96JG9 3925 aaPredicted RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms