RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 RGMAQ96B86 450 aa3.26□□□□□ -1.89
UBR3-208ENST00000474426 PPWD1Q96BP3 646 aaKnown RBP3.26□□□□□ -1.89
UBR3-208ENST00000474426 NARS2Q96I59 477 aaKnown RBP3.26□□□□□ -1.89
UBR3-208ENST00000474426 ST6GAL2Q96JF0 529 aa3.26□□□□□ -1.89
UBR3-208ENST00000474426 TSNAXQ99598 290 aaKnown RBP3.26□□□□□ -1.89
UBR3-208ENST00000474426 PDCD10Q9BUL8 212 aa3.26□□□□□ -1.89
UBR3-208ENST00000474426 RBM24Q9BX46 236 aaKnown RBP3.26□□□□□ -1.89
UBR3-208ENST00000474426 MS4A7Q9GZW8 240 aaPredicted RBP3.26□□□□□ -1.89
UBR3-208ENST00000474426 PLK3Q9H4B4 646 aa3.26□□□□□ -1.89
UBR3-208ENST00000474426 ZNF696Q9H7X3 374 aa3.26□□□□□ -1.89
UBR3-208ENST00000474426 AKIRIN1Q9H9L7 192 aaPredicted RBP3.26□□□□□ -1.89
UBR3-208ENST00000474426 MEAF6Q9HAF1 191 aa3.26□□□□□ -1.89
UBR3-208ENST00000474426 BCO1Q9HAY6 547 aa3.26□□□□□ -1.89
UBR3-208ENST00000474426 GBA2Q9HCG7 927 aaPredicted RBP3.26□□□□□ -1.89
UBR3-208ENST00000474426 MYOZ2Q9NPC6 264 aa3.26□□□□□ -1.89
UBR3-208ENST00000474426 CATSPERZQ9NTU4 200 aa3.26□□□□□ -1.89
UBR3-208ENST00000474426 HAO2Q9NYQ3 351 aa3.26□□□□□ -1.89
UBR3-208ENST00000474426 RCC2Q9P258 522 aaKnown RBP3.26□□□□□ -1.89
UBR3-208ENST00000474426 NXT1Q9UKK6 140 aaKnown RBP3.26□□□□□ -1.89
UBR3-208ENST00000474426 NEU3Q9UQ49 428 aa3.26□□□□□ -1.89
UBR3-208ENST00000474426 TMEM184BQ9Y519 407 aaPredicted RBP3.26□□□□□ -1.89
UBR3-208ENST00000474426 KCNMB2Q9Y691 235 aa3.26□□□□□ -1.89
UBR3-208ENST00000474426 MYH10P35580 1976 aa3.26□□□□□ -1.89
UBR3-208ENST00000474426 PCF11O94913 1555 aaKnown RBP3.25□□□□□ -1.89
UBR3-208ENST00000474426 URB2Q14146 1524 aaKnown RBP3.25□□□□□ -1.89
UBR3-208ENST00000474426 hCG_38984A0A1B0GV85 526 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 FAM90A18PA6NE21 464 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 FAM90A16PA6NEW6 464 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 FAM90A9PA6NNJ1 464 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 FAM90A5PA8MXJ8 464 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 RNASEK-C17orf49H0YIS7 233 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 PLRG1O43660 514 aaKnown RBP3.25□□□□□ -1.89
UBR3-208ENST00000474426 TCF21O43680 179 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 GADD45GO95257 159 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 PTTG1O95997 202 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 CST1P01037 141 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 GYPCP04921 128 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 FAM90A15PP0C7V4 464 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 FAM90A14PP0C7W9 464 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 ZSCAN5DPP0CG00 497 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 RRASP10301 218 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 MYOGP15173 224 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 GABRR1P24046 479 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 ACKR3P25106 362 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 ADRA1AP35348 466 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 LGALS7P47929 136 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 HLCSP50747 726 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 RAG2P55895 527 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 AESQ08117 197 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 SKP2Q13309 424 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 RAB31Q13636 194 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 SMIM21Q3B7S5 101 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 ZNF658BQ4V348 819 aaPredicted RBP3.25□□□□□ -1.89
UBR3-208ENST00000474426 TRIQKQ629K1 86 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 IZUMO2Q6UXV1 221 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 PIM3Q86V86 326 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 COMMD7Q86VX2 200 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 C12orf45Q8N5I9 185 aaPredicted RBP3.25□□□□□ -1.89
UBR3-208ENST00000474426 OR2M7Q8NG81 312 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 LNX1Q8TBB1 728 aaPredicted RBP3.25□□□□□ -1.89
UBR3-208ENST00000474426 ST8SIA1Q92185 356 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.25□□□□□ -1.89
UBR3-208ENST00000474426 SLC25A28Q96A46 364 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 COQ10AQ96MF6 247 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 SPATA33Q96N06 139 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 CNTNAP3BQ96NU0 1288 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 GPR78Q96P69 363 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 PRMT1Q99873 361 aaKnown RBP3.25□□□□□ -1.89
UBR3-208ENST00000474426 CNTNAP3Q9BZ76 1288 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 PCDHAC1Q9H158 963 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 ZMAT4Q9H898 229 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 PXMP2Q9NR77 195 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 C2orf42Q9NWW7 574 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 GFOD1Q9NXC2 390 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 TMEM9Q9P0T7 183 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 ZNF223Q9UK11 482 aaPredicted RBP3.25□□□□□ -1.89
UBR3-208ENST00000474426 FBXL4Q9UKA2 621 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 ZNF337Q9Y3M9 751 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 PCDHA2Q9Y5H9 948 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 PCDHA13Q9Y5I0 950 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 TAF6LQ9Y6J9 622 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 PRXQ9BXM0 1461 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 MYH4Q9Y623 1939 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 ABCA5Q8WWZ7 1642 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 UGGT2Q9NYU1 1516 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 MYH1P12882 1939 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 SLC22A23A1A5C7 686 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 TRDCB7Z8K6 153 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 SLC16A4O15374 487 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 TEX33O43247 280 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 KCNK2O95069 426 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 UQCRBP14927 111 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 EGR1P18146 543 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 SERPINA4P29622 427 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 GKP32189 559 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 KDELR2P33947 212 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 ACVR1BP36896 505 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 RPS19P39019 145 aaKnown RBP3.25□□□□□ -1.89
UBR3-208ENST00000474426 RFC3P40938 356 aa3.25□□□□□ -1.89
UBR3-208ENST00000474426 GFRA1P56159 465 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms