RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 KLHL3Q9UH77 587 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 MMP17Q9ULZ9 603 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 SCN2AQ99250 2005 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 KIR2DS5A0A0G2JLQ3 304 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 A0A0G2JNG1 304 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 BOLA2-SMG1P6H3BVE0 249 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 KIR2DS3K7RE56 304 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 THY1P04216 161 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 RPS4Y1P22090 263 aaKnown RBP14.06□□□□□ -0.16
LDLR-202ENST00000455727 LTBRP36941 435 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 MTNR1AP48039 350 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 DNASE1L3Q13609 305 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 KIR2DS5Q14953 304 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 TRMT12Q53H54 448 aaKnown RBP14.06□□□□□ -0.16
LDLR-202ENST00000455727 PAQR6Q6TCH4 344 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 ZNF836Q6ZNA1 936 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 STACQ99469 402 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 ABCB10Q9NRK6 738 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 CLDND1Q9NY35 253 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 SSR3Q9UNL2 185 aa14.06□□□□□ -0.16
LDLR-202ENST00000455727 A0A0J9YY10 115 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 STK25O00506 426 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 CYR61O00622 381 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 GPR75O95800 540 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 DBIP07108 87 aaKnown RBP14.05□□□□□ -0.16
LDLR-202ENST00000455727 RPS19P39019 145 aaKnown RBP14.05□□□□□ -0.16
LDLR-202ENST00000455727 LSSP48449 732 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 WNT4P56705 351 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 TFF2Q03403 129 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 SPANXN2Q5MJ10 180 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 ZNF619Q8N2I2 560 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 CDRT4Q8N9R6 151 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 GALNT6Q8NCL4 622 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 SIMC1Q8NDZ2 872 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 OR13H1Q8NG92 308 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 RFKQ969G6 155 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 RNFT2Q96EX2 444 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 EXOSC4Q9NPD3 245 aaKnown RBP14.05□□□□□ -0.16
LDLR-202ENST00000455727 KRCC1Q9NPI7 259 aaPredicted RBP14.05□□□□□ -0.16
LDLR-202ENST00000455727 TMEM74BQ9NUR3 256 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 EVA1BQ9NVM1 165 aa14.05□□□□□ -0.16
LDLR-202ENST00000455727 USP36Q9P275 1121 aaKnown RBP14.05□□□□□ -0.16
LDLR-202ENST00000455727 MRPS2Q9Y399 296 aaKnown RBP14.05□□□□□ -0.16
LDLR-202ENST00000455727 EXOSC1Q9Y3B2 195 aaKnown RBP14.05□□□□□ -0.16
LDLR-202ENST00000455727 LOC110117498-PIK3R3F6TDL0 507 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 TBX1O43435 398 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 STX11O75558 287 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 CCR5P51681 352 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 ZNF136P52737 540 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 HOXC5Q00444 222 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 MLLT1Q03111 559 aaPredicted RBP14.04□□□□□ -0.16
LDLR-202ENST00000455727 TMEM31Q5JXX7 168 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 STEAP3Q658P3 488 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 MEX3DQ86XN8 651 aaKnown RBP14.04□□□□□ -0.16
LDLR-202ENST00000455727 SLC22A18ASQ8N1D0 253 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 CACTIN-AS1Q8N1I8 211 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 POGLUT1Q8NBL1 392 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 FLCNQ8NFG4 579 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 PIK3R3Q92569 461 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 HRASLS2Q9NWW9 162 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 CD207Q9UJ71 328 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 SURF4O15260 269 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 GALR3O60755 368 aaPredicted RBP14.04□□□□□ -0.16
LDLR-202ENST00000455727 AK1P00568 194 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 IGLV3-19P01714 112 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 MAP3K8P41279 467 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 RORCP51449 518 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 MAP4K2Q12851 820 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 TPBGQ13641 420 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 LIPKQ5VXJ0 399 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 ZNF620Q6ZNG0 422 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 RANBP3LQ86VV4 465 aaPredicted RBP14.04□□□□□ -0.16
LDLR-202ENST00000455727 NRMQ8IXM6 262 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 PATE1Q8WXA2 126 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 KLHL25Q9H0H3 589 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 NTNG1Q9Y2I2 539 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 PCDHGB6Q9Y5F9 930 aa14.04□□□□□ -0.16
LDLR-202ENST00000455727 CEP290O15078 2479 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 FGF17O60258 216 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 EIF2S1P05198 315 aaKnown RBP14.03□□□□□ -0.16
LDLR-202ENST00000455727 IGHV4-34P06331 123 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 GNSP15586 552 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 COPZ1P61923 177 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 KRR1Q13601 381 aaKnown RBP14.03□□□□□ -0.16
LDLR-202ENST00000455727 CCINQ13939 588 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 PRICKLE4Q2TBC4 344 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 DCST2Q5T1A1 773 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 AADACL4Q5VUY2 407 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 RNF113BQ8IZP6 322 aaKnown RBP14.03□□□□□ -0.16
LDLR-202ENST00000455727 SMRP1Q8NCR6 262 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 OR4Q3Q8NH05 313 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 TMEM255BQ8WV15 326 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 GPR52Q9Y2T5 361 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 CDH10Q9Y6N8 788 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 MN1Q10571 1320 aaPredicted RBP14.03□□□□□ -0.16
LDLR-202ENST00000455727 TRAPPC13A5PLN9 417 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 ZNF860A6NHJ4 632 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 FMO6PO60774 539 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 LDB3O75112 727 aa14.03□□□□□ -0.16
LDLR-202ENST00000455727 SOX30O94993 753 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms