RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	C19orf53	Q9UNZ5	99 aa	Predicted RBP	7.88	□□□□□ -1.15
RFX3-209	ENST00000451859	L3MBTL1	Q9Y468	752 aa		7.88	□□□□□ -1.15
RFX3-209	ENST00000451859	CCL27	Q9Y4X3	112 aa		7.88	□□□□□ -1.15
RFX3-209	ENST00000451859	PCDHGB3	Q9Y5G1	929 aa		7.88	□□□□□ -1.15
RFX3-209	ENST00000451859		A0A087WV62	115 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	CLCA1	A8K7I4	914 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859		B4DXG7	233 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	ACTL6A	O96019	429 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	NUDT17	P0C025	328 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	NEFH	P12036	1026 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	DPP4	P27487	766 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	SRD5A2	P31213	254 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	GABRA3	P34903	492 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	TIMP3	P35625	211 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	KIR2DL3	P43628	341 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	GAS1	P54826	345 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	GAB1	Q13480	694 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	KIAA0040	Q15053	153 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	SF3B4	Q15427	424 aa	Known RBP eCLIP	7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	ARL13A	Q5H913	290 aa	Predicted RBP	7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	NHSL2	Q5HYW2	709 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	RAET1L	Q5VY80	246 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	CES4A	Q5XG92	561 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	NSUN5P2	Q63ZY6	315 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	TMEM81	Q6P7N7	255 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	C1orf229	Q6ZS94	237 aa	Predicted RBP	7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	IKBIP	Q70UQ0	350 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	EXOC3L1	Q86VI1	746 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	GCNT2	Q8N0V5	402 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	RIBC1	Q8N443	379 aa	Predicted RBP	7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	GPR151	Q8TDV0	419 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	AEN	Q8WTP8	325 aa	Known RBP	7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	SMPDL3B	Q92485	455 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	SLC9A6	Q92581	669 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	NTNG2	Q96CW9	530 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	ELP4	Q96EB1	424 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	CHMP6	Q96FZ7	201 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	RMND5B	Q96G75	393 aa	Predicted RBP	7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	PKNOX2	Q96KN3	472 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	CCT7	Q99832	543 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	C1orf50	Q9BV19	199 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	REEP4	Q9H6H4	257 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859		Q9N2J8	555 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	MKS1	Q9NXB0	559 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	MED11	Q9P086	117 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	KCNN3	Q9UGI6	736 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	LGALS13	Q9UHV8	139 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	CBLC	Q9ULV8	474 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	TRAF6	Q9Y4K3	522 aa		7.87	□□□□□ -1.15
RFX3-209	ENST00000451859	FREM1	Q5H8C1	2179 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	HIVEP1	P15822	2718 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	WDR91	A4D1P6	747 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	CD8B2	A6NJW9	211 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	ESPN	B1AK53	854 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	PLOD2	O00469	737 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	LSM1	O15116	133 aa	Known RBP	7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	SEC14L5	O43304	696 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	NPHS1	O60500	1241 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	PEX11A	O75192	247 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	SLITRK5	O94991	958 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	SLU7	O95391	586 aa	Known RBP	7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	TMIGD3	P0DMS9	266 aa	Predicted RBP	7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	HK1	P19367	917 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	CAPN3	P20807	821 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	PRPH2	P23942	346 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	CEACAM8	P31997	349 aa	Predicted RBP	7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	CPA2	P48052	419 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	MANF	P55145	182 aa	Known RBP	7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	MRPS22	P82650	360 aa	Known RBP	7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	FOXF2	Q12947	444 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	GRAMD1B	Q3KR37	738 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	KRT71	Q3SY84	523 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	FBXW10	Q5XX13	1052 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	PPP4R4	Q6NUP7	873 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	AAGAB	Q6PD74	315 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	P4HA3	Q7Z4N8	544 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	LUZP2	Q86TE4	346 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	MARCH3	Q86UD3	253 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	GRAMD2A	Q8IUY3	354 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	OR2L13	Q8N349	312 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	GATS	Q8NAP1	163 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	NUP43	Q8NFH3	380 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	OR2M3	Q8NG83	312 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	ZFP28	Q8NHY6	868 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	JADE3	Q92613	823 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	RNASE6	Q93091	150 aa	Known RBP	7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	INTS12	Q96CB8	462 aa	Known RBP	7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	LRRC46	Q96FV0	321 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	PPP1R36	Q96LQ0	422 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	KRTAP4-12	Q9BQ66	201 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	GPATCH1	Q9BRR8	931 aa	Known RBP	7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	YIPF4	Q9BSR8	244 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	TRMO	Q9BU70	441 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	TBL1XR1	Q9BZK7	514 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	RTN4R	Q9BZR6	473 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	CENPH	Q9H3R5	247 aa		7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	EML4	Q9HC35	981 aa	Known RBP	7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	DNAJB12	Q9NXW2	375 aa	Known RBP	7.86	□□□□□ -1.15
RFX3-209	ENST00000451859	TAS2R7	Q9NYW3	318 aa		7.86	□□□□□ -1.15

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms