RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 OR2M3Q8NG83 312 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 FAM110BQ8TC76 370 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 ZNF559Q9BR84 538 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 DSN1Q9H410 356 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 SSU72Q9NP77 194 aaKnown RBP17.58■□□□□ 0.4
USP40-207ENST00000450940 JKAMPQ9P055 326 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 PPP4R1LQ9P1A2 415 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 GIMAP2Q9UG22 337 aa17.58■□□□□ 0.4
USP40-207ENST00000450940 NUP214P35658 2090 aaPredicted RBP17.58■□□□□ 0.4
USP40-207ENST00000450940 SPG11Q96JI7 2443 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 IGLV3-32A0A0A0MS00 114 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 GXYLT2A0PJZ3 443 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 C17orf51A8MQB3 221 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 CTIFO43310 598 aaKnown RBP17.57■□□□□ 0.4
USP40-207ENST00000450940 SCO2O43819 266 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 PEX11AO75192 247 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 IGKV1D-16P01601 117 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 DDX5P17844 614 aaKnown RBP17.57■□□□□ 0.4
USP40-207ENST00000450940 OPRM1P35372 400 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 RPL3P39023 403 aaKnown RBP17.57■□□□□ 0.4
USP40-207ENST00000450940 STARP49675 285 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 KRT71Q3SY84 523 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 TNFAIP8L3Q5GJ75 292 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 ZCCHC12Q6PEW1 402 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 C9orf106Q8NAJ2 232 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 NUP43Q8NFH3 380 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 OR4K17Q8NGC6 315 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 RNASE6Q93091 150 aaKnown RBP17.57■□□□□ 0.4
USP40-207ENST00000450940 WNT2BQ93097 391 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 SFXN2Q96NB2 322 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 ZFP3Q96NJ6 502 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 CLCF1Q9UBD9 225 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 FOXD3Q9UJU5 478 aaPredicted RBP17.57■□□□□ 0.4
USP40-207ENST00000450940 DKKL1Q9UK85 242 aa17.57■□□□□ 0.4
USP40-207ENST00000450940 H0Y3Z8 333 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 SCAMP2O15127 329 aaKnown RBP17.56■□□□□ 0.4
USP40-207ENST00000450940 EMC8O43402 210 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 LYPLA1O75608 230 aaPredicted RBP17.56■□□□□ 0.4
USP40-207ENST00000450940 RCBTB2O95199 551 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 KCNH1O95259 989 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 UTS2O95399 124 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 NGFRP08138 427 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 SERPINB4P48594 390 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 CLK3P49761 638 aaKnown RBP17.56■□□□□ 0.4
USP40-207ENST00000450940 PRR5P85299 388 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 GANABQ14697 944 aaKnown RBP17.56■□□□□ 0.4
USP40-207ENST00000450940 GLYR1Q49A26 553 aaPredicted RBP17.56■□□□□ 0.4
USP40-207ENST00000450940 ATP6AP1LQ52LC2 224 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 APOOLQ6UXV4 268 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 EXOC3L1Q86VI1 746 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 NUDCD3Q8IVD9 361 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 SLC16A11Q8NCK7 471 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 PSMA8Q8TAA3 256 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 AGR3Q8TD06 166 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 GPR151Q8TDV0 419 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 DUSP19Q8WTR2 217 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 PIK3R3Q92569 461 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 LRRC46Q96FV0 321 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 MS4A4EQ96PG1 132 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 TM9SF2Q99805 663 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 EQTNQ9NQ60 294 aa17.56■□□□□ 0.4
USP40-207ENST00000450940 SIRT3Q9NTG7 399 aaPredicted RBP17.56■□□□□ 0.4
USP40-207ENST00000450940 CLCA1A8K7I4 914 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 LINC01387J3KSC0 135 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 BIRC5O15392 142 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 RGS16O15492 202 aaPredicted RBP17.55■□□□□ 0.4
USP40-207ENST00000450940 HCRTR2O43614 444 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 DHRS4L1P0CG22 281 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 ACP2P11117 423 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 LCN1P31025 176 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 HPCAL1P37235 193 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 PRKAG1P54619 331 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 SRYQ05066 204 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 C17orf67Q0P5P2 114 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.55■□□□□ 0.4
USP40-207ENST00000450940 MFSD12Q6NUT3 480 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 MARCH3Q86UD3 253 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 RIMKLAQ8IXN7 391 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 NATD1Q8N6N6 113 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 OR7A2PQ8NGA2 310 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 COQ8BQ96D53 544 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 RMND5BQ96G75 393 aaPredicted RBP17.55■□□□□ 0.4
USP40-207ENST00000450940 ZIM3Q96PE6 472 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 MED11Q9P086 117 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 RPH3AQ9Y2J0 694 aaPredicted RBP17.55■□□□□ 0.4
USP40-207ENST00000450940 MPDZO75970 2070 aa17.55■□□□□ 0.4
USP40-207ENST00000450940 CELSR1Q9NYQ6 3014 aa17.54■□□□□ 0.4
USP40-207ENST00000450940 FAM221AA4D161 298 aa17.54■□□□□ 0.4
USP40-207ENST00000450940 ALG1L2C9J202 215 aa17.54■□□□□ 0.4
USP40-207ENST00000450940 TUBBP07437 444 aa17.54■□□□□ 0.4
USP40-207ENST00000450940 TMIGD3P0DMS9 266 aaPredicted RBP17.54■□□□□ 0.4
USP40-207ENST00000450940 LAMP1P11279 417 aa17.54■□□□□ 0.4
USP40-207ENST00000450940 PEPDP12955 493 aa17.54■□□□□ 0.4
USP40-207ENST00000450940 UQCRC1P31930 480 aa17.54■□□□□ 0.4
USP40-207ENST00000450940 KIR2DL3P43628 341 aa17.54■□□□□ 0.4
USP40-207ENST00000450940 DIO3P55073 304 aa17.54■□□□□ 0.4
USP40-207ENST00000450940 C21orf58P58505 322 aa17.54■□□□□ 0.4
USP40-207ENST00000450940 MYBPHQ13203 477 aa17.54■□□□□ 0.4
USP40-207ENST00000450940 PTGR1Q14914 329 aa17.54■□□□□ 0.4
USP40-207ENST00000450940 SMU1Q2TAY7 513 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms