RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 FANK1Q8TC84 345 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 ALG8Q9BVK2 526 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 LGR4Q9BXB1 951 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 SLA2Q9H6Q3 261 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 RBFOX1Q9NWB1 397 aaKnown RBP11.14□□□□□ -0.63
MSH6-204ENST00000445503 FKBP14Q9NWM8 211 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 NPAP1Q9NZP6 1156 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 PLEKHM1Q9Y4G2 1056 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 PATJQ8NI35 1801 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 DOCK6Q96HP0 2047 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 A0A0G2JPF8 293 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 HNRNPCL3B7ZW38 293 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 PRRT4C9JH25 899 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 HCN1O60741 890 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 EFCAB14O75071 495 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 HNRNPCL4P0DMR1 293 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 GABRA5P31644 462 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 TEKQ02763 1124 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 FAPQ12884 760 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 ZNF234Q14588 700 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 MINDY4Q4G0A6 757 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 CCDC58Q4VC31 144 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 ZC3H14Q6PJT7 736 aaKnown RBP11.14□□□□□ -0.63
MSH6-204ENST00000445503 DGLUCYQ7Z3D6 616 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 ADGRD2Q7Z7M1 963 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 ZNF296Q8WUU4 475 aaPredicted RBP11.14□□□□□ -0.63
MSH6-204ENST00000445503 TMEM255BQ8WV15 326 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 SDHCQ99643 169 aaPredicted RBP11.14□□□□□ -0.63
MSH6-204ENST00000445503 TMEM27Q9HBJ8 222 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 NLGN3Q9NZ94 848 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 A0A1W2PRQ8 180 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 SERTM1A2A2V5 107 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 MID1O15344 667 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 FCMRO60667 390 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 FUT1P19526 365 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 ZNF81P51508 661 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 ASAH1Q13510 395 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 C2orf27AQ580R0 203 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 TMEFF1Q8IYR6 380 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 CDS1Q92903 461 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 SIGLEC11Q96RL6 698 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 GPA33Q99795 319 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 GAL3ST1Q99999 423 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 THAP7Q9BT49 309 aaPredicted RBP11.14□□□□□ -0.63
MSH6-204ENST00000445503 USP36Q9P275 1121 aaKnown RBP11.14□□□□□ -0.63
MSH6-204ENST00000445503 SPEF1Q9Y4P9 236 aa11.14□□□□□ -0.63
MSH6-204ENST00000445503 TMEM229AB2RXF0 380 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 NPIPB8E9PQR5 432 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 AIFM1O95831 613 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 CHRNB1P11230 501 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 FLYWCH1Q4VC44 716 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 FAM27D1Q5T7N8 215 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 C12orf73Q69YU5 71 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 FGD2Q7Z6J4 655 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 C12orf40Q86WS4 652 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 ZNF547Q8IVP9 402 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 TTLQ8NG68 377 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 INSM2Q96T92 566 aaPredicted RBP11.13□□□□□ -0.63
MSH6-204ENST00000445503 C19orf43Q9BQ61 176 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 NXF2Q9GZY0 626 aaKnown RBP11.13□□□□□ -0.63
MSH6-204ENST00000445503 MIXL1Q9H2W2 232 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 DPAGT1Q9H3H5 408 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 MGAT4AQ9UM21 535 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 A0A1W2PS29 197 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 DUXAA6NLW8 204 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 HYAL3O43820 417 aaPredicted RBP11.13□□□□□ -0.63
MSH6-204ENST00000445503 SLC35G6P0C7Q6 338 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 CPEP16870 476 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 HIST1H1TP22492 207 aaPredicted RBP11.13□□□□□ -0.63
MSH6-204ENST00000445503 STOMP27105 288 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 RAB28P51157 221 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 EEF1A2Q05639 463 aaKnown RBP11.13□□□□□ -0.63
MSH6-204ENST00000445503 RPA4Q13156 261 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 HNRNPA1L2Q32P51 320 aaKnown RBP11.13□□□□□ -0.63
MSH6-204ENST00000445503 SFRP4Q6FHJ7 346 aaPredicted RBP11.13□□□□□ -0.63
MSH6-204ENST00000445503 PARGQ86W56 976 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 DPCDQ9BVM2 203 aaPredicted RBP11.13□□□□□ -0.63
MSH6-204ENST00000445503 RBCK1Q9BYM8 510 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 PELI2Q9HAT8 420 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 SLC25A19Q9HC21 320 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 SAGE1Q9NXZ1 904 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 MAU2Q9Y6X3 613 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 PSMD9O00233 223 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 CACNB4O00305 520 aaPredicted RBP11.13□□□□□ -0.63
MSH6-204ENST00000445503 MT-ND5P03915 603 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 ARSBP15848 533 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 ITGB7P26010 798 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 CSNK1G2P78368 415 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 CDK3Q00526 305 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 ZNF155Q12901 538 aaPredicted RBP11.13□□□□□ -0.63
MSH6-204ENST00000445503 TSPAN31Q12999 210 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 BCL2A1Q16548 175 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 OR5K2Q8NHB8 316 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 LRRC20Q8TCA0 184 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 DNAJA3Q96EY1 480 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 PINK1Q9BXM7 581 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 ACSS1Q9NUB1 689 aaPredicted RBP11.13□□□□□ -0.63
MSH6-204ENST00000445503 ZSCAN32Q9NX65 697 aa11.13□□□□□ -0.63
MSH6-204ENST00000445503 RGS9O75916 674 aaPredicted RBP11.13□□□□□ -0.63
MSH6-204ENST00000445503 CCL5P13501 91 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms