RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 AGAP6Q5VW22 663 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 XKR5Q6UX68 686 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 MKXQ8IYA7 352 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 MARVELD2Q8N4S9 558 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 TRMT2BQ96GJ1 504 aaKnown RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 AGAP4Q96P64 663 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 EGLN1Q9GZT9 426 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 AMBNQ9NP70 447 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 SMCO4Q9NRQ5 59 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 SERTAD4Q9NUC0 356 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 TRPM6Q9BX84 2022 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 C12orf71A8MTZ7 269 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 SDC3O75056 442 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 TPPPO94811 219 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CELP19835 753 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 GSK3AP49840 483 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 APOFQ13790 326 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CYP1B1Q16678 543 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 FAM109AQ8N4B1 249 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 MS4A15Q8N5U1 240 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 RBMXL3Q8N7X1 1067 aaKnown RBP6.51□□□□□ -1.37
SCN1A-204ENST00000423058 TMEM178AQ8NBL3 297 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 OR51A7Q8NH64 312 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 PLIN4Q96Q06 1357 aa6.51□□□□□ -1.37
SCN1A-204ENST00000423058 CSF2RAP15509 400 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 C1orf61Q13536 156 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 KIR2DS3Q14952 304 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 PDLIM3Q53GG5 364 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 Q6ZSR6 202 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ILDR1Q86SU0 546 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 NAT8LQ8N9F0 302 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 FAM156AQ8NDB6 213 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 STEAP2Q8NFT2 490 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ZFYVE21Q9BQ24 234 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 TTTY10Q9BZA0 68 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 IL25Q9H293 177 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 GNB4Q9HAV0 340 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 STUB1Q9UNE7 303 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 KNDC1Q76NI1 1749 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 RCCD1A6NED2 376 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ADAP00813 363 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 BPIP17213 487 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 CHRNB2P17787 502 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 EPHA1P21709 976 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 SDHBP21912 280 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 FOXN2P32314 431 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 FXYD4P59646 89 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 NNATQ16517 81 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ACSM3Q53FZ2 586 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 KHDC1LQ5JSQ8 128 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 TLDC1Q6P9B6 456 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 BRICD5Q6PL45 260 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 FAM83HQ6ZRV2 1179 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ZFAND4Q86XD8 727 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 PPP1R3BQ86XI6 285 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 KLHDC8AQ8IYD2 350 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 SMG8Q8ND04 991 aaKnown RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 OR6Q1Q8NGQ2 317 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 RAB8BQ92930 207 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 MSANTD3Q96H12 275 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 TWNKQ96RR1 684 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 PCDHAC1Q9H158 963 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 MMP27Q9H306 513 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ZDHHC2Q9UIJ5 367 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 RICTORQ6R327 1708 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 A0A0D9SEW6 157 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 EEF1E1O43324 174 aaKnown RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 CD6P30203 668 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 PBX2P40425 430 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 SHC2P98077 582 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 CNPY1Q3B7I2 92 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 CLDN19Q8N6F1 224 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 PHOSPHO2Q8TCD6 241 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ZFAND1Q8TCF1 268 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF296Q8WUU4 475 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ZFAND2BQ8WV99 257 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 SLC7A7Q9UM01 511 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ASXL3Q9C0F0 2248 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF487B1APH4 448 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 C17orf105B2RV13 164 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 E9PI62 339 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 C17orf112F2Z3M2 114 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 BOLA2-SMG1P6H3BVE0 249 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 EIF3FO00303 357 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ALDH3B1P43353 468 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 NUDT6P53370 316 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 MLLT10P55197 1068 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 FAM74A1Q5RGS3 127 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 CDCA2Q69YH5 1023 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 PIAS4Q8N2W9 510 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 OR5T1Q8NG75 326 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 OR1J4Q8NGS1 313 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 RNF170Q96K19 258 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 PELI2Q9HAT8 420 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ELOVL3Q9HB03 270 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 ATXN7L1Q9ULK2 861 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-204ENST00000423058 MROH1Q8NDA8 1641 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 TEX51A0A1B0GUA7 166 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 TRAPPC13A5PLN9 417 aa6.5□□□□□ -1.37
SCN1A-204ENST00000423058 CRYM-AS1A6NIL9 109 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms