RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 DEFB133Q30KQ1 61 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 ATAD3BQ5T9A4 648 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 MFSD4BQ5TF39 518 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 C1orf94Q6P1W5 598 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 PODNL1Q6PEZ8 512 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 GDPGP1Q6ZNW5 385 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 ASPGQ86U10 573 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 LACC1Q8IV20 430 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 FAM26EQ8N5C1 309 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 OR5D16Q8NGK9 328 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 SLC7A13Q8TCU3 470 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 LMX1AQ8TE12 382 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 UCN3Q969E3 161 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 TRNT1Q96Q11 434 aaKnown RBP13.84□□□□□ -0.19
USP4-203ENST00000415188 RSPO3Q9BXY4 272 aaPredicted RBP13.84□□□□□ -0.19
USP4-203ENST00000415188 SIAEQ9HAT2 523 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 SPHK1Q9NYA1 384 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 NTMQ9P121 344 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 APOBEC3BQ9UH17 382 aaKnown RBP13.84□□□□□ -0.19
USP4-203ENST00000415188 DAPK2Q9UIK4 370 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 SLC13A4Q9UKG4 626 aa13.84□□□□□ -0.19
USP4-203ENST00000415188 ISPDA4D126 451 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 URADA6NGE7 173 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 DUXAA6NLW8 204 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 H3BN98 237 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 CCRL2O00421 344 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 PGRMC2O15173 223 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 AQP9O43315 295 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 TLX3O43711 291 aaPredicted RBP13.83□□□□□ -0.2
USP4-203ENST00000415188 ENTPD6O75354 484 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 ALPPP05187 535 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 HNRNPCP07910 306 aaKnown RBP eCLIP13.83□□□□□ -0.2
USP4-203ENST00000415188 ENDOUP21128 410 aaKnown RBP13.83□□□□□ -0.2
USP4-203ENST00000415188 FUT4P22083 530 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 BUD31P41223 144 aaPredicted RBP13.83□□□□□ -0.2
USP4-203ENST00000415188 E2F1Q01094 437 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 RELAQ04206 551 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 FUT5Q11128 374 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 GPR19Q15760 415 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 FAM181AQ8N9Y4 354 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 NUP43Q8NFH3 380 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 OR4K5Q8NGD3 323 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 WDR36Q8NI36 951 aaKnown RBP13.83□□□□□ -0.2
USP4-203ENST00000415188 ZFPM2Q8WW38 1151 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 ELP4Q96EB1 424 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 TMEM80Q96HE8 168 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 ZNF681Q96N22 645 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 OR7D2Q96RA2 312 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 MGLLQ99685 303 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 DUSP23Q9BVJ7 150 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 MND1Q9BWT6 205 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 ACTRT3Q9BYD9 372 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 ALOXE3Q9BYJ1 711 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 NRSN2Q9GZP1 204 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 SCHIP1Q9P0W5 487 aaPredicted RBP13.83□□□□□ -0.2
USP4-203ENST00000415188 FBXW2Q9UKT8 454 aa13.83□□□□□ -0.2
USP4-203ENST00000415188 A0A087WV48 116 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 FUOMA2VDF0 154 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 FAM227AF5H4B4 570 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 M0R129 80 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 M0R3H8 397 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 TP53P04637 393 aaPredicted RBP13.82□□□□□ -0.2
USP4-203ENST00000415188 IFI6P09912 130 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 ZNF10P21506 573 aaPredicted RBP13.82□□□□□ -0.2
USP4-203ENST00000415188 PRKAR1BP31321 381 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 TNFRSF17Q02223 184 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 C1orf61Q13536 156 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 RTP5Q14D33 572 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 TRAM2Q15035 370 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 GPAT3Q53EU6 434 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 TMEM107Q6UX40 140 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 RBM45Q8IUH3 476 aaKnown RBP13.82□□□□□ -0.2
USP4-203ENST00000415188 CCDC116Q8IYX3 515 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 TOR1AIP2Q8NFQ8 470 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 IFI44Q8TCB0 444 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 GNPDA2Q8TDQ7 276 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 OR1E3Q8WZA6 343 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 SERINC2Q96SA4 455 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 TAPBPLQ9BX59 468 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 PRRG3Q9BZD7 231 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 SRMSQ9H3Y6 488 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 ZBTB20Q9HC78 741 aaPredicted RBP13.82□□□□□ -0.2
USP4-203ENST00000415188 MAN2C1Q9NTJ4 1040 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 TBC1D29Q9UFV1 150 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 CFL2Q9Y281 166 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 KLHL20Q9Y2M5 609 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 PEX16Q9Y5Y5 336 aa13.82□□□□□ -0.2
USP4-203ENST00000415188 GLOD5A6NK44 160 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 SNTNA6NMZ2 147 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 LOC400499M0QZD8 3231 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 BRINP1O60477 761 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 PRKRAO75569 313 aaKnown RBP13.81□□□□□ -0.2
USP4-203ENST00000415188 EPPINO95925 133 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 SCG5P05408 212 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 CELA2BP08218 269 aaPredicted RBP13.81□□□□□ -0.2
USP4-203ENST00000415188 SLC35G6P0C7Q6 338 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 CDH3P22223 829 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 S100A5P33763 92 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 SOX6P35712 828 aa13.81□□□□□ -0.2
USP4-203ENST00000415188 PCYT1AP49585 367 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms