RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 TSPAN16Q9UKR8 245 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 MRPS33Q9Y291 106 aaKnown RBP2.3□□□□□ -2.04
MCF2-204ENST00000414978 MYLKQ15746 1914 aa2.3□□□□□ -2.04
MCF2-204ENST00000414978 BCLAF3A2AJT9 711 aaKnown RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 CASTOR2A6NHX0 329 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 N4BP1O75113 896 aaKnown RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 LRCH4O75427 683 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 ANXA9O76027 345 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 ERVK-10P10266 1014 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 CYP3A5P20815 502 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 SLC1A3P43003 542 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 NOVA1P51513 510 aaKnown RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 SRYQ05066 204 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 CACNG1Q06432 222 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 EXOSC2Q13868 293 aaKnown RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 CEACAM7Q14002 265 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 ZRSR1Q15695 479 aaKnown RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 HADHQ16836 314 aaKnown RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 OTUD1Q5VV17 481 aaPredicted RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 ZNF425Q6IV72 752 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 PNCKQ6P2M8 343 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 SASS6Q6UVJ0 657 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 PCSK4Q6UW60 755 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 ZNF852Q6ZMS4 543 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 ZNF813Q6ZN06 617 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 KCTD8Q6ZWB6 473 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 ACOT1Q86TX2 421 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 EFCAB13Q8IY85 973 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 NAGSQ8N159 534 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 BHLHE23Q8NDY6 225 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 OR1J1Q8NGS3 322 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 CCDC12Q8WUD4 166 aaPredicted RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 C1QTNF7Q9BXJ2 289 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 PANK2Q9BZ23 570 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 ROPN1BQ9BZX4 212 aaPredicted RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 CLSTN2Q9H4D0 955 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 AZI2Q9H6S1 392 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 C8orf33Q9H7E9 229 aaPredicted RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 KAT8Q9H7Z6 458 aaKnown RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 PARVGQ9HBI0 331 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 IL26Q9NPH9 171 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 GSN-AS1Q9NRJ2 163 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 TAS2R16Q9NYV7 291 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 ZNF319Q9P2F9 582 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 ING1Q9UK53 422 aaPredicted RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 C15orf41Q9Y2V0 281 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 EYSQ5T1H1 3165 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 TRAV25A0A0B4J276 109 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 ZNF732B4DXR9 585 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 KRT36O76013 467 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 SORBS2O94875 1100 aaKnown RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 BMP15O95972 392 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 GOLGA8HP0CJ92 632 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 SNHG28P0DPA3 235 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 RALAP11233 206 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 FUT6P51993 359 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 SLC3A1Q07837 685 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 GPS2Q13227 327 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 EXOSC7Q15024 291 aaKnown RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 PHKG1Q16816 387 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 GPR33Q49SQ1 333 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 GLIPR1L2Q4G1C9 344 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 SIRPB2Q5JXA9 342 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 AGBL2Q5U5Z8 902 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 IL23RQ5VWK5 629 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 ANGPTL8Q6UXH0 198 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 LRRC70Q7Z2Q7 622 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 OR2T12Q8NG77 320 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 CNIH3Q8TBE1 160 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 FAM110BQ8TC76 370 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 CACNG8Q8WXS5 425 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 NRGNQ92686 78 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 MRPL24Q96A35 216 aaKnown RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 SARAFQ96BY9 339 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 TM4SF19Q96DZ7 209 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 SLC47A1Q96FL8 570 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 PANX1Q96RD7 426 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 RAB40CQ96S21 281 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 NPAS2Q99743 824 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 ACBD6Q9BR61 282 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 SYNDIG1Q9H7V2 258 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 APMAPQ9HDC9 416 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 UBE2TQ9NPD8 197 aaPredicted RBP2.29□□□□□ -2.04
MCF2-204ENST00000414978 TMEM9BQ9NQ34 198 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 POT1Q9NUX5 634 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 SEC14L3Q9UDX4 400 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 CD300AQ9UGN4 299 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 KLK13Q9UKR3 277 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 FOXJ3Q9UPW0 622 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 PPP2R2CQ9Y2T4 447 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 AMDHD2Q9Y303 409 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 EVPLQ92817 2033 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 LOC100653049A0A140TA62 436 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 HEATR9A2RTY3 570 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 HELTA6NFD8 242 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 SMCO2A6NFE2 343 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 OVOL3O00110 214 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 MID1O15344 667 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 KCNAB3O43448 404 aa2.29□□□□□ -2.04
MCF2-204ENST00000414978 SH3BGRLO75368 114 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms