RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 A0A1B0GTQ1 180 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 C13orf42A0A1B0GVH6 325 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 SPAARA0A1B0GVQ0 90 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 SERTM2A0A1B0GWG4 89 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 FITM1A5D6W6 292 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 LINC00862A6NCI5 91 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 TMEM202A6NGA9 273 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 DBX1A6NMT0 343 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 MAGEB17A8MXT2 336 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 ANKRD66B4E2M5 251 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 USP17L23D6RBM5 183 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 H3BNH8 94 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 PSMD11O00231 422 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 PSMD12O00232 456 aaPredicted RBP4.27□□□□□ -1.73
SF3B1-202ENST00000409915 PGRMC1O00264 195 aaKnown RBP4.27□□□□□ -1.73
SF3B1-202ENST00000409915 CCL22O00626 93 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 INPP4BO15327 924 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 SSX5O60225 188 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 CRCPO75575 148 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 CIB2O75838 187 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 IPO13O94829 963 aaKnown RBP4.27□□□□□ -1.73
SF3B1-202ENST00000409915 CBX6O95503 412 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 SOD1P00441 154 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 GOT2P00505 430 aaKnown RBP4.27□□□□□ -1.73
SF3B1-202ENST00000409915 LCATP04180 440 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 CEACAM5P06731 702 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 DBHP09172 617 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 EBLN1P0CF75 366 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 TRAPPC2P0DI81 140 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 TRAPPC2BP0DI82 140 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 TMEM225BP0DP42 221 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 CD59P13987 128 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 CA4P22748 312 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 ACP1P24666 158 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 EPHA3P29320 983 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 WNT5AP41221 380 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 KIR2DL3P43628 341 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 NOVA1P51513 510 aaKnown RBP4.27□□□□□ -1.73
SF3B1-202ENST00000409915 STC1P52823 247 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 GEMP55040 296 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 CDH13P55290 713 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 PFN3P60673 137 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 SNTB2Q13425 540 aaKnown RBP4.27□□□□□ -1.73
SF3B1-202ENST00000409915 C1orf61Q13536 156 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 DHX34Q14147 1143 aaKnown RBP4.27□□□□□ -1.73
SF3B1-202ENST00000409915 PTPRCAPQ14761 206 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 TRIP13Q15645 432 aaPredicted RBP4.27□□□□□ -1.73
SF3B1-202ENST00000409915 SLC1A5Q15758 541 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 MAPK11Q15759 364 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 PDK4Q16654 411 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 CDKN3Q16667 212 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 LRRC36Q1X8D7 754 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 COL28A1Q2UY09 1125 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 CR1LQ2VPA4 569 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 GXYLT1Q4G148 440 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 KLHL26Q53HC5 615 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 SIRPB2Q5JXA9 342 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 PXDC1Q5TGL8 231 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 SULT1C3Q6IMI6 304 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 OGFOD2Q6N063 350 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 ANKRD26P1Q6NSI1 321 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 DOK6Q6PKX4 331 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 TMEM182Q6ZP80 229 aaPredicted RBP4.27□□□□□ -1.73
SF3B1-202ENST00000409915 RD3Q7Z3Z2 195 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 TECPR1Q7Z6L1 1165 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 PARGQ86W56 976 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 NAXDQ8IW45 347 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 DENND6AQ8IWF6 608 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 CHERPQ8IWX8 916 aaKnown RBP4.27□□□□□ -1.73
SF3B1-202ENST00000409915 PALM2Q8IXS6 379 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 FAM9CQ8IZT9 166 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 STPG3Q8N7X2 389 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 PRELID2Q8N945 189 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 Q8NA96 180 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 ICA1LQ8NDH6 482 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 GPR26Q8NDV2 337 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 ZNF548Q8NEK5 533 aaPredicted RBP4.27□□□□□ -1.73
SF3B1-202ENST00000409915 OR10S1Q8NGN2 331 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 OR8K3Q8NH51 312 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 DTX3LQ8TDB6 740 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 MCOLN3Q8TDD5 553 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 BLOC1S5Q8TDH9 187 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 HEXDCQ8WVB3 486 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 SELENOMQ8WWX9 145 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 S100ZQ8WXG8 99 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 OR1E3Q8WZA6 343 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 TSACCQ96A04 125 aaPredicted RBP4.27□□□□□ -1.73
SF3B1-202ENST00000409915 MCUR1Q96AQ8 359 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 C12orf43Q96C57 262 aaKnown RBP4.27□□□□□ -1.73
SF3B1-202ENST00000409915 AP2M1Q96CW1 435 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 PHF21BQ96EK2 531 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 RRNAD1Q96FB5 475 aaKnown RBP4.27□□□□□ -1.73
SF3B1-202ENST00000409915 SCRN2Q96FV2 425 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 TRMT61AQ96FX7 289 aaKnown RBP4.27□□□□□ -1.73
SF3B1-202ENST00000409915 TPD52L3Q96J77 140 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 FCRL5Q96RD9 977 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 DIRC2Q96SL1 478 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 VAT1Q99536 393 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 TBL1YQ9BQ87 522 aa4.27□□□□□ -1.73
SF3B1-202ENST00000409915 TMEM79Q9BSE2 394 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms