RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 CYP8B1Q9UNU6 501 aa12.52□□□□□ -0.4
VPS54-203ENST00000409558 SLCO1B1Q9Y6L6 691 aa12.52□□□□□ -0.4
VPS54-203ENST00000409558 FAM25AB3EWG3 89 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 FAM25CB3EWG5 89 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 FAM25GB3EWG6 89 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 RDH16O75452 317 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 TUBA1BP68363 451 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 BHLHB9Q6PI77 547 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 TUBA1AQ71U36 451 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 PIGXQ8TBF5 258 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 HCAR2Q8TDS4 363 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 POP5Q969H6 163 aaKnown RBP12.52□□□□□ -0.41
VPS54-203ENST00000409558 ZNF559Q9BR84 538 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 MND1Q9BWT6 205 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 PTGFRNQ9P2B2 879 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 CFL2Q9Y281 166 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 FABP12A6NFH5 140 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 LGI1O95970 557 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 FCER2P06734 321 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 PEPDP12955 493 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 ACVR1BP36896 505 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 LIMS1P48059 325 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 SLC3A1Q07837 685 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 C6orf183Q5T699 404 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 SLX4IPQ5VYV7 408 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 ARL9Q6T311 187 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 RPTNQ6XPR3 784 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 ATCAYQ86WG3 371 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 MARCH9Q86YJ5 346 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 HOMEZQ8IX15 550 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 OR4N2Q8NGD1 307 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 OR2L8Q8NGY9 312 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 SP7Q8TDD2 431 aaPredicted RBP12.52□□□□□ -0.41
VPS54-203ENST00000409558 CRELD1Q96HD1 420 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 SLC38A2Q96QD8 506 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 C20orf141Q9NUB4 165 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 PCDHGA3Q9Y5H0 932 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 PEX16Q9Y5Y5 336 aa12.52□□□□□ -0.41
VPS54-203ENST00000409558 GXYLT2A0PJZ3 443 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 SOBPA7XYQ1 873 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 PROM1O43490 865 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 ADH1BP00325 375 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 INPP1P49441 399 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 DEFA1P59665 94 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 DEFA3P59666 94 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 DUSP6Q16828 381 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 OR4K14Q8NGD5 310 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 FAM3CQ92520 227 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 RERGQ96A58 199 aaPredicted RBP12.51□□□□□ -0.41
VPS54-203ENST00000409558 SIGLEC11Q96RL6 698 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 GDE1Q9NZC3 331 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 ENOPH1Q9UHY7 261 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 NCKAP1Q9Y2A7 1128 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 A0A1W2PQ09 198 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 DRD2P14416 443 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 PAICSP22234 425 aaKnown RBP12.51□□□□□ -0.41
VPS54-203ENST00000409558 RORCP51449 518 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 HMGA2P52926 109 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 LRIT3Q3SXY7 679 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 FBXO42Q6P3S6 717 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 FIGLAQ6QHK4 219 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 Q6ZSR6 202 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 ZAR1Q86SH2 424 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 OR9A4Q8NGU2 314 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 SLC41A3Q96GZ6 507 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 SPATA5L1Q9BVQ7 753 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 IFT27Q9BW83 186 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 ISG20L2Q9H9L3 353 aaKnown RBP12.51□□□□□ -0.41
VPS54-203ENST00000409558 PLCXD1Q9NUJ7 323 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 ZNF232Q9UNY5 417 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 CTSEP14091 401 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 APEX1P27695 318 aaKnown RBP12.51□□□□□ -0.41
VPS54-203ENST00000409558 SMIM11AP58511 58 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 ZNF155Q12901 538 aaPredicted RBP12.51□□□□□ -0.41
VPS54-203ENST00000409558 PUS10Q3MIT2 529 aaKnown RBP12.51□□□□□ -0.41
VPS54-203ENST00000409558 FBXO43Q4G163 708 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 ASB18Q6ZVZ8 466 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 NRROSQ86YC3 692 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 LRRC25Q8N386 305 aaPredicted RBP12.51□□□□□ -0.41
VPS54-203ENST00000409558 ORAI1Q96D31 301 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 PALMDQ9NP74 551 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 ACSS1Q9NUB1 689 aaPredicted RBP12.51□□□□□ -0.41
VPS54-203ENST00000409558 TXNL4BQ9NX01 149 aaKnown RBP12.51□□□□□ -0.41
VPS54-203ENST00000409558 PIAS3Q9Y6X2 628 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 DOCK8Q8NF50 2099 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 FGF17O60258 216 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 SDC3O75056 442 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 RAB36O95755 333 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 IL18Q14116 193 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 KCNJ8Q15842 424 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 C10orf53Q8N6V4 93 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 PRRC1Q96M27 445 aa12.51□□□□□ -0.41
VPS54-203ENST00000409558 H0YGG7 62 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 MPZL2O60487 215 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 GUCY1B2O75343 617 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 HSD17B2P37059 387 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 OR2B6P58173 313 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 ARF3P61204 181 aaPredicted RBP12.5□□□□□ -0.41
VPS54-203ENST00000409558 PCDH1Q08174 1060 aa12.5□□□□□ -0.41
VPS54-203ENST00000409558 SELENBP1Q13228 472 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms