RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 PPP2CAP67775 309 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 TAGLNQ01995 201 aaKnown RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 NLRP8Q86W28 1048 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 LRRC25Q8N386 305 aaPredicted RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 CPEB3Q8NE35 698 aaKnown RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 SLC37A2Q8TED4 501 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 BOD1Q96IK1 185 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 DPH1Q9BZG8 443 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 ARNT2Q9HBZ2 717 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 CSNK1G1Q9HCP0 422 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 TCF7L1Q9HCS4 588 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 ACTR3BQ9P1U1 418 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 LRFN1Q9P244 771 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 C1orf226A1L170 272 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 LOC730098B7Z3J9 87 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 M0R2N6 131 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 DLGAP1O14490 977 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 JUNP05412 331 aaKnown RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 PRPS2P11908 318 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 NME1P15531 152 aaKnown RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 TBPL1P62380 186 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 TLE3Q04726 772 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 POU4F2Q12837 409 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 PMS2P3Q13401 168 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 CARD17Q5XLA6 110 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 MED25Q71SY5 747 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 GALNT5Q7Z7M9 940 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 NIPA2Q8N8Q9 360 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 OR4Q3Q8NH05 313 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 SCGB1C1Q8TD33 95 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 SPRYD4Q8WW59 207 aaPredicted RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 MOAP1Q96BY2 351 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 TSGA13Q96PP4 275 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 TTYH2Q9BSA4 534 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 OCEL1Q9H607 264 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 RPS10P5Q9NQ39 176 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 GHRLQ9UBU3 117 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 NOCTQ9UK39 431 aaKnown RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 MGAT4BQ9UQ53 548 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 DOCK2Q92608 1830 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 SLC35F4A4IF30 521 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 TRAPPC13A5PLN9 417 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 EIF1AYO14602 144 aaKnown RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 HDAC3O15379 428 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 PAPSS2O95340 614 aaPredicted RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 COL6A2P12110 1019 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 PCMT1P22061 227 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 MC3RP41968 323 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 AQP4P55087 323 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 CFHR1Q03591 330 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 NPRL3Q12980 569 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 DOC2AQ14183 400 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 BCL2A1Q16548 175 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 KLHL22Q53GT1 634 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 C10orf62Q5T681 223 aaPredicted RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 CBR4Q8N4T8 237 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 C12orf45Q8N5I9 185 aaPredicted RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 OR7G1Q8NGA0 311 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 OR1E3Q8WZA6 343 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 RND1Q92730 232 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 TBC1D20Q96BZ9 403 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 MFSD3Q96ES6 412 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 C7orf34Q96L11 122 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF416Q9BWM5 594 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 ARL6Q9H0F7 186 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 YARS2Q9Y2Z4 477 aaKnown RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 RAP2CQ9Y3L5 183 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 CAPN6Q9Y6Q1 641 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 DLG5Q8TDM6 1919 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 A0A1W2PPL8 197 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 C20orf202A1L168 122 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 KRBA1A5PL33 1030 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 A8MV72 311 aaPredicted RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 ENTPD6O75354 484 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 SLITRK5O94991 958 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 PAHP00439 452 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 PRDX3P30048 256 aaKnown RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 JAM2P57087 298 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 CHAF1BQ13112 559 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 EIF2B1Q14232 305 aaKnown RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 PCBP2Q15366 365 aaKnown RBP eCLIP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 FAM189A2Q15884 450 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 SGCAQ16586 387 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 CLPPQ16740 277 aaPredicted RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF404Q494X3 552 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 AARDQ4LEZ3 155 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 ZNF766Q5HY98 468 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 TXNRD3NBQ6F5E7 133 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 PGM2L1Q6PCE3 622 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 FRRS1Q6ZNA5 592 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 COX15Q7KZN9 410 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 CREG2Q8IUH2 290 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 ZFP82Q8N141 532 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 FBXL14Q8N1E6 418 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 FUCA2Q9BTY2 467 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 ENKD1Q9H0I2 346 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 OR51B5Q9H339 312 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 CNOT11Q9UKZ1 510 aaKnown RBP6.89□□□□□ -1.31
SCN9A-202ENST00000409435 ZDHHC9Q9Y397 364 aa6.89□□□□□ -1.31
SCN9A-202ENST00000409435 NAALAD2Q9Y3Q0 740 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms