RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 TRIM45Q9H8W5 580 aaPredicted RBP16.65■□□□□ 0.26
SDC1-203ENST00000403076 STMN3Q9NZ72 180 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 ABI3Q9P2A4 366 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 NPIPA5A0A0B4J1W7 369 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 NPIPA7E9PJI5 369 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 ZNF354AO60765 605 aaPredicted RBP16.65■□□□□ 0.26
SDC1-203ENST00000403076 SERPINB7O75635 380 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 ALPPP05187 535 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 NPIPA8P0DM63 369 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 ETS2P15036 469 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 NAGAP17050 411 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 ITPKBP27987 946 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 SOX3P41225 446 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 ST13P50502 369 aaKnown RBP16.65■□□□□ 0.26
SDC1-203ENST00000403076 PNLIPRP2P54317 469 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 UCNP55089 124 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.65■□□□□ 0.26
SDC1-203ENST00000403076 HMGN2P46Q86SG4 172 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 PEX5LQ8IYB4 626 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 ZNF614Q8N883 585 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 FAM13CQ8NE31 585 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 SPPL2AQ8TCT8 520 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 GORASP2Q9H8Y8 452 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 CPNE5Q9HCH3 593 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 GPR83Q9NYM4 423 aa16.65■□□□□ 0.26
SDC1-203ENST00000403076 ACOT8O14734 319 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 TSPAN2O60636 221 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 ABCB7O75027 752 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 GCM2O75603 506 aaPredicted RBP16.64■□□□□ 0.25
SDC1-203ENST00000403076 SERPINA1P01009 418 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 OPN1SWP03999 348 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 CYP4B1P13584 511 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 HPGDP15428 266 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 ATP6V1B2P21281 511 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 SOX8P57073 446 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 PCBP3P57721 371 aaKnown RBP16.64■□□□□ 0.25
SDC1-203ENST00000403076 EFR3AQ14156 821 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 CRB2Q5IJ48 1285 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 AGAP7PQ5VUJ5 663 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 IL20RBQ6UXL0 311 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 CCDC80Q76M96 950 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 ARMC8Q8IUR7 673 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 ARMC10Q8N2F6 343 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 BHLHE22Q8NFJ8 381 aaPredicted RBP16.64■□□□□ 0.25
SDC1-203ENST00000403076 PMM1Q92871 262 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 AGAP4Q96P64 663 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 HOXD1Q9GZZ0 328 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 SAP130Q9H0E3 1048 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 QRSL1Q9H0R6 528 aaKnown RBP16.64■□□□□ 0.25
SDC1-203ENST00000403076 SEC14L3Q9UDX4 400 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 ZNF232Q9UNY5 417 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 KCNMB2Q9Y691 235 aa16.64■□□□□ 0.25
SDC1-203ENST00000403076 OR6C70A6NIJ9 312 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 KIAA0513O60268 411 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 DNAJB5O75953 348 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 OR6B1O95007 311 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 UTS2O95399 124 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 ZIC2O95409 532 aaPredicted RBP16.63■□□□□ 0.25
SDC1-203ENST00000403076 ZNF682O95780 498 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 GUSBP08236 651 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 FBXO45P0C2W1 286 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 LCN1P31025 176 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 DCTP40126 519 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 ERFP50548 548 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 TMPRSS3P57727 454 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 FBXW4P57775 412 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 LCN8Q6JVE9 175 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 LINC00696Q6ZRV3 163 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 NUP54Q7Z3B4 507 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 SPATA24Q86W54 205 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 BEST3Q8N1M1 668 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 OR52P1PQ8NH57 321 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 ZG16BQ96DA0 208 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 TMCO6Q96DC7 493 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 SPACA9Q96E40 222 aaPredicted RBP16.63■□□□□ 0.25
SDC1-203ENST00000403076 UBQLN4Q9NRR5 601 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 HPF1Q9NWY4 346 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 ADPRHL2Q9NX46 363 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 RPS6KA6Q9UK32 745 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 IFT52Q9Y366 437 aa16.63■□□□□ 0.25
SDC1-203ENST00000403076 GPC6Q9Y625 555 aaPredicted RBP16.63■□□□□ 0.25
SDC1-203ENST00000403076 MED13Q9UHV7 2174 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 K7ENP7 123 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 TP53I11O14683 189 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 ICOSLGO75144 302 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 UGT2B11O75310 529 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 IL7RP16871 459 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 ATP12AP54707 1039 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 LARS2Q15031 903 aaKnown RBP16.62■□□□□ 0.25
SDC1-203ENST00000403076 GRAMD1BQ3KR37 738 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 CYBRD1Q53TN4 286 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 MTX3Q5HYI7 312 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 ZNF311Q5JNZ3 666 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 DESI1Q6ICB0 168 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 INO80CQ6PI98 192 aaPredicted RBP16.62■□□□□ 0.25
SDC1-203ENST00000403076 LYPD8Q6UX82 237 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 APLFQ8IW19 511 aaPredicted RBP16.62■□□□□ 0.25
SDC1-203ENST00000403076 SMYD1Q8NB12 490 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 ZNF527Q8NB42 609 aa16.62■□□□□ 0.25
SDC1-203ENST00000403076 WDR60Q8WVS4 1066 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms