RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 EFHC1Q5JVL4 640 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 GPR157Q5UAW9 335 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 PPP1R2P3Q6NXS1 205 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 C17orf107Q6ZR85 190 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 TPGS1Q6ZTW0 290 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 COX8CQ7Z4L0 72 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 SERPINA9Q86WD7 417 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 TBC1D10CQ8IV04 446 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 CDKL3Q8IVW4 592 aaPredicted RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ZC3H3Q8IXZ2 948 aaKnown RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 LRRC34Q8IZ02 419 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 GATSQ8NAP1 163 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 MFSD9Q8NBP5 474 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 HCAR2Q8TDS4 363 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 SLC35F5Q8WV83 523 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 MRGPRFQ96AM1 343 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 BPIFA2Q96DR5 249 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 C12orf42Q96LP6 360 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 FOXN4Q96NZ1 517 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 COPS8Q99627 209 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 RAB11FIP5Q9BXF6 653 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ERVK-6Q9BXR3 956 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 PRRG3Q9BZD7 231 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 RAB1BQ9H0U4 201 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 DPEP2Q9H4A9 486 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 TLE6Q9H808 572 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 RNF121Q9H920 327 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 CSNK1G1Q9HCP0 422 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 C1orf123Q9NWV4 160 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 PLEK2Q9NYT0 353 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 SLC12A6Q9UHW9 1150 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 CYTH4Q9UIA0 394 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ABCG2Q9UNQ0 655 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 MEMO1Q9Y316 297 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 RBMX2Q9Y388 322 aaKnown RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 OR1A2Q9Y585 309 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ABCC2Q92887 1545 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 WRNQ14191 1432 aaPredicted RBP eCLIP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 PLB1Q6P1J6 1458 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 KIR2DS5A0A0G2JLQ3 304 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 TRBV11-1A0A0K0K1C0 115 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 PLSCR5A0PG75 271 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 SH3PXD2BA1X283 911 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF840PA6NDX5 716 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 FRG2CA6NGY1 282 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 C2CD4BA6NLJ0 364 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF732B4DXR9 585 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 C2CD4DB7Z1M9 353 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 KIR2DS3K7RE56 304 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 DLGAP1O14490 977 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ADAM10O14672 748 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 TSPAN2O60636 221 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 HCN1O60741 890 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 MYO1DO94832 1006 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ERLIN2O94905 339 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 PAPSS2O95340 614 aaPredicted RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 H1F0P07305 194 aaKnown RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 RETP07949 1114 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 CTSAP10619 480 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ATP1B2P14415 290 aaPredicted RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 UGT1A5P35504 534 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 HTR5AP47898 357 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 PLP1P60201 277 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 SEC61BP60468 96 aaKnown RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 RPS13P62277 151 aaKnown RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 LRRC63Q05C16 580 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 PEX6Q13608 980 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ODF4Q2M2E3 257 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 RGS21Q2M5E4 152 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 SLX4IPQ5VYV7 408 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 SLC8B1Q6J4K2 584 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 FAM71F2Q6NXP2 309 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 DOK6Q6PKX4 331 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 CWC27Q6UX04 472 aaKnown RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 TMEM64Q6YI46 380 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 FRA10AC1Q70Z53 315 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 BHLHA15Q7RTS1 189 aaPredicted RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 SATL1Q86VE3 508 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 GPBP1Q86WP2 473 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 LRRC6Q86X45 466 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 RBM45Q8IUH3 476 aaKnown RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 TMEM139Q8IV31 216 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 PARP8Q8N3A8 854 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 GBGT1Q8N5D6 347 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 LRTM2Q8N967 370 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 CHDHQ8NE62 594 aaPredicted RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ARNTL2Q8WYA1 636 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 OPTNQ96CV9 577 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 C10orf35Q96D05 121 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 LURAP1Q96LR2 239 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 SLC29A1Q99808 456 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 DPH7Q9BTV6 452 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 MTIF3Q9H2K0 278 aaKnown RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 RHOJQ9H4E5 214 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 MRM3Q9HC36 420 aaKnown RBP3.67□□□□□ -1.82
HMGB1-204ENST00000399489 EURLQ9NYK6 297 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 PTTG3PQ9NZH4 202 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 ADAM22Q9P0K1 906 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 SLC7A8Q9UHI5 535 aa3.67□□□□□ -1.82
HMGB1-204ENST00000399489 RNF6Q9Y252 685 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms