RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 RAP2AP10114 183 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 DRD2P14416 443 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 MLLT10P55197 1068 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 LIM2P55344 173 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 GABARAPL2P60520 117 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 ZIC1Q15915 447 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 CCDC103Q8IW40 242 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 POC5Q8NA72 575 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 TSPEARQ8WU66 669 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 SLX1AQ9BQ83 275 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 TAPBPLQ9BX59 468 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 TPK1Q9H3S4 243 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 FARSAQ9Y285 508 aaKnown RBP9.63□□□□□ -0.87
COL6A3-205ENST00000392004 PCDHA9Q9Y5H5 950 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 IGHV5-10-1A0A0J9YXX1 117 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 A0A1W2PQM1 296 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 BRINP1O60477 761 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 CLK1P49759 484 aaKnown RBP9.63□□□□□ -0.87
COL6A3-205ENST00000392004 TIAL1Q01085 375 aaKnown RBP eCLIP9.63□□□□□ -0.87
COL6A3-205ENST00000392004 DGCR6Q14129 220 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 SYPL1Q16563 259 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 RSPO4Q2I0M5 234 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-205ENST00000392004 ZNF362Q5T0B9 420 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-205ENST00000392004 TBPL2Q6SJ96 375 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 BTLAQ7Z6A9 289 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 METTL4Q8N3J2 472 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 OR14L1PQ8NHC6 308 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 TMEM19Q96HH6 336 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 RDH12Q96NR8 316 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 PRR14Q9BWN1 585 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 MKKSQ9NPJ1 570 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-205ENST00000392004 POLE4Q9NR33 117 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 RLIMQ9NVW2 624 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 KCND3Q9UK17 655 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 POU2F3Q9UKI9 436 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 DAPP1Q9UN19 280 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 TPRKBQ9Y3C4 175 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 PCDHGA5Q9Y5G8 931 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 PCM1Q15154 2024 aa9.63□□□□□ -0.87
COL6A3-205ENST00000392004 FXYD1O00168 92 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 SOX14O95416 240 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 HTR1EP28566 365 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 CDKN2CP42773 168 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 GPR3P46089 330 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 VASPP50552 380 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-205ENST00000392004 CDKL4Q5MAI5 379 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 RSBN1Q5VWQ0 802 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-205ENST00000392004 CASP12Q6UXS9 341 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 P2RY8Q86VZ1 359 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 SLC5A8Q8N695 610 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 L3MBTL4Q8NA19 623 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 SDR39U1Q9NRG7 319 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-205ENST00000392004 LILRA5A6NI73 299 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 TNFRSF11BO00300 401 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 TP53I11O14683 189 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 HCRTR1O43613 425 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 UGDHO60701 494 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 INMTO95050 263 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 APOA1P02647 267 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 SLC9A3P48764 834 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 GTF2IRD2BQ6EKJ0 949 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 XAF1Q6GPH4 301 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 RTL4Q6ZR62 310 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 GTF2IRD2Q86UP8 949 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 FAM98AQ8NCA5 519 aaKnown RBP9.62□□□□□ -0.87
COL6A3-205ENST00000392004 SLC16A11Q8NCK7 471 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 OR5L2Q8NGL0 311 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 OR51A7Q8NH64 312 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 TM4SF18Q96CE8 201 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 RBM4BQ9BQ04 359 aaKnown RBP9.62□□□□□ -0.87
COL6A3-205ENST00000392004 RBM4Q9BWF3 364 aaKnown RBP9.62□□□□□ -0.87
COL6A3-205ENST00000392004 CDCP1Q9H5V8 836 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 SMURF2Q9HAU4 748 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 DDX28Q9NUL7 540 aaKnown RBP9.62□□□□□ -0.87
COL6A3-205ENST00000392004 FAM118AQ9NWS6 357 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 ZNF225Q9UK10 706 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 MYO7BQ6PIF6 2116 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 PRRC2CQ9Y520 2896 aaKnown RBP9.62□□□□□ -0.87
COL6A3-205ENST00000392004 A0A1W2PS29 197 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 STMND1H3BQB6 276 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 UGT2B11O75310 529 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 ZGLP1P0C6A0 271 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 CSRP3P50461 194 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 AQP6Q13520 282 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 SERTAD2Q14140 314 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 ELOAQ14241 798 aaKnown RBP9.62□□□□□ -0.87
COL6A3-205ENST00000392004 SLC35F1Q5T1Q4 408 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 EIF3MQ7L2H7 374 aaKnown RBP9.62□□□□□ -0.87
COL6A3-205ENST00000392004 ZNF527Q8NB42 609 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 PAPD5Q8NDF8 572 aaKnown RBP9.62□□□□□ -0.87
COL6A3-205ENST00000392004 PIK3C3Q8NEB9 887 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 MCFD2Q8NI22 146 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 MUL1Q969V5 352 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 EPS8L2Q9H6S3 715 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 AKIRIN1Q9H9L7 192 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-205ENST00000392004 AKIP1Q9NQ31 210 aa9.62□□□□□ -0.87
COL6A3-205ENST00000392004 NFKBIL1Q9UBC1 381 aaPredicted RBP9.62□□□□□ -0.87
COL6A3-205ENST00000392004 CREBBPQ92793 2442 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 FAM166BA8MTA8 275 aa9.61□□□□□ -0.87
COL6A3-205ENST00000392004 M0R3H8 397 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms