RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 PSMB7Q99436 277 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 TBCDQ9BTW9 1192 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 TRIM9Q9C026 710 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 PNNQ9H307 717 aaKnown RBP1.6□□□□□ -2.15
VPS13A-206ENST00000376646 RBM28Q9NW13 759 aaKnown RBP1.6□□□□□ -2.15
VPS13A-206ENST00000376646 RDH8Q9NYR8 311 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 TMOD2Q9NZR1 351 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 DHRS4-AS1Q9P1J3 65 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 EPS15L1Q9UBC2 864 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 PRODH2Q9UF12 536 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 ATP6V0A2Q9Y487 856 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 KIF3AQ9Y496 699 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 FBLL1A6NHQ2 334 aaKnown RBP1.6□□□□□ -2.15
VPS13A-206ENST00000376646 ZNF487B1APH4 448 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 E2F3O00716 465 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 NDC80O14777 642 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 FAM200BP0CF97 657 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 HSPA5P11021 654 aaKnown RBP1.6□□□□□ -2.15
VPS13A-206ENST00000376646 UQCRBP14927 111 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 IDSP22304 550 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 STK19P49842 368 aaPredicted RBP1.6□□□□□ -2.15
VPS13A-206ENST00000376646 HMGCS2P54868 508 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 NAPAP54920 295 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 OVGP1Q12889 678 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 LTB4RQ15722 352 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 ZIC1Q15915 447 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 ZNF311Q5JNZ3 666 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 SLX4IPQ5VYV7 408 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 ASPHD2Q6ICH7 369 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 NIPAL3Q6P499 406 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 LEG1Q6P5S2 330 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 BTNL3Q6UXE8 466 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 ARMCX2Q7L311 632 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 HIPK1Q86Z02 1210 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 CENPLQ8N0S6 344 aaPredicted RBP1.6□□□□□ -2.15
VPS13A-206ENST00000376646 SLC22A18ASQ8N1D0 253 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 TBCKQ8TEA7 893 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 DTNBP1Q96EV8 351 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 DHTKD1Q96HY7 919 aaPredicted RBP1.6□□□□□ -2.15
VPS13A-206ENST00000376646 PIWIL1Q96J94 861 aaKnown RBP1.6□□□□□ -2.15
VPS13A-206ENST00000376646 VPS35Q96QK1 796 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 TBC1D10AQ9BXI6 508 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 MRPL13Q9BYD1 178 aaKnown RBP1.6□□□□□ -2.15
VPS13A-206ENST00000376646 GSDMCQ9BYG8 508 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 YTHDF1Q9BYJ9 559 aaKnown RBP1.6□□□□□ -2.15
VPS13A-206ENST00000376646 CALHM2Q9HA72 323 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 LPAR2Q9HBW0 351 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 AGPAT5Q9NUQ2 364 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 UTP6Q9NYH9 597 aaKnown RBP1.6□□□□□ -2.15
VPS13A-206ENST00000376646 RAI14Q9P0K7 980 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 NYAP2Q9P242 653 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 CHRNA9Q9UGM1 479 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 LAMP5Q9UJQ1 280 aa1.6□□□□□ -2.15
VPS13A-206ENST00000376646 COL16A1Q07092 1604 aaPredicted RBP1.6□□□□□ -2.15
VPS13A-206ENST00000376646 IGHV3OR16-12A0A075B7B8 117 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 TRAV9-2A0A087WT02 112 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 IGKV6D-21A0A0A0MT36 114 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 TRIM49BA6NDI0 452 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 LRRC30A6NM36 301 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 SAP18O00422 153 aaKnown RBP1.59□□□□□ -2.15
VPS13A-206ENST00000376646 PPIHO43447 177 aaKnown RBP1.59□□□□□ -2.15
VPS13A-206ENST00000376646 KRT6BP04259 564 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 PCCBP05166 539 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 ALPIP09923 528 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 EPB41P11171 864 aaKnown RBP1.59□□□□□ -2.15
VPS13A-206ENST00000376646 PVRP15151 417 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 DRD3P35462 400 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 KRT6CP48668 564 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 KRTAP10-1P60331 282 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 LYZP61626 148 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 RPS6P62753 249 aaKnown RBP1.59□□□□□ -2.15
VPS13A-206ENST00000376646 IL9RQ01113 521 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 ELP6Q0PNE2 266 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 SLC10A1Q14973 349 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 PPP1R3AQ16821 1122 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 Q1RN00 199 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 TMEM52BQ4KMG9 183 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 SLC22A6Q4U2R8 563 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 TMEM41BQ5BJD5 291 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 RIPPLY2Q5TAB7 128 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 CYS1Q717R9 158 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 STKLD1Q8NE28 680 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 FNDC8Q8TC99 324 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 C11orf24Q96F05 449 aaPredicted RBP1.59□□□□□ -2.15
VPS13A-206ENST00000376646 C4orf36Q96KX1 117 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 MCCC1Q96RQ3 725 aaPredicted RBP1.59□□□□□ -2.15
VPS13A-206ENST00000376646 TPPP3Q9BW30 176 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 WDR76Q9H967 626 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 GPN2Q9H9Y4 310 aaPredicted RBP1.59□□□□□ -2.15
VPS13A-206ENST00000376646 AMBNQ9NP70 447 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 CLEC5AQ9NY25 188 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 BARX2Q9UMQ3 279 aaPredicted RBP1.59□□□□□ -2.15
VPS13A-206ENST00000376646 B9D1Q9UPM9 204 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 EXOSC1Q9Y3B2 195 aaKnown RBP1.59□□□□□ -2.15
VPS13A-206ENST00000376646 METP08581 1390 aa1.59□□□□□ -2.15
VPS13A-206ENST00000376646 FAM168BA1KXE4 195 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 FAM74A7A6NL05 159 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 HAT1O14929 419 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 MAPK13O15264 365 aa1.59□□□□□ -2.16
VPS13A-206ENST00000376646 SRPX2O60687 465 aaPredicted RBP1.59□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms