RNA–Protein interactions for RNA: ENST00000366159.8

TNFRSF1A-202, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,339 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-202ENST00000366159 SPAG7O75391 227 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 TMIGD3P0DMS9 266 aaPredicted RBP12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 DNAJA1P31689 397 aaKnown RBP12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 SERPINB5P36952 375 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 RPL38P63173 70 aaKnown RBP12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 PRR5P85299 388 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 SRYQ05066 204 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 HSPB3Q12988 150 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 MLC1Q15049 377 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 TMEM44Q2T9K0 475 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 FLYWCH1Q4VC44 716 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 EMBQ6PCB8 327 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 TMEM200AQ86VY9 491 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 DUSP19Q8WTR2 217 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 FAM222BQ8WU58 562 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 NRGNQ92686 78 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 PPCDCQ96CD2 204 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 DTNBP1Q96EV8 351 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 ZBED6CLQ96FA7 236 aaPredicted RBP12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 C3orf30Q96M34 536 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 SFXN2Q96NB2 322 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 TM9SF2Q99805 663 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 SFXN3Q9BWM7 321 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 IQCGQ9H095 443 aaKnown RBP12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 SDHAF3Q9NRP4 125 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 MED11Q9P086 117 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 PPP4R1LQ9P1A2 415 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 ATP6V1HQ9UI12 483 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 MRTO4Q9UKD2 239 aaKnown RBP12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 RPH3AQ9Y2J0 694 aaPredicted RBP12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 FIS1Q9Y3D6 152 aa12.37□□□□□ -0.43
TNFRSF1A-202ENST00000366159 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 SCO2O43819 266 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 TNFSF13O75888 250 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 ZWINTO95229 277 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 UTS2O95399 124 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 TGM6O95932 706 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 CHEK2O96017 543 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 BPGMP07738 259 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 NGFRP08138 427 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 GABRA3P34903 492 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 PSMD4P55036 377 aaKnown RBP12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 SORDQ00796 357 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 GANABQ14697 944 aaKnown RBP12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 ZNHIT3Q15649 155 aaPredicted RBP12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 GLYR1Q49A26 553 aaPredicted RBP12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 ZCCHC23Q6ZST2 131 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 MARCH3Q86UD3 253 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 MED12LQ86YW9 2145 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 MREGQ8N565 214 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 CDRT4Q8N9R6 151 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 SLC16A11Q8NCK7 471 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 NUP43Q8NFH3 380 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 OR4K17Q8NGC6 315 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 CEP70Q8NHQ1 597 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 CLHC1Q8NHS4 586 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 PIK3R3Q92569 461 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 C1GALT1C1Q96EU7 318 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 LRRC46Q96FV0 321 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 EML4Q9HC35 981 aaKnown RBP12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 SIRT3Q9NTG7 399 aaPredicted RBP12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 DNAJB12Q9NXW2 375 aaKnown RBP12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 GIMAP2Q9UG22 337 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 ZDHHC2Q9UIJ5 367 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 DKKL1Q9UK85 242 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 ZNF337Q9Y3M9 751 aa12.36□□□□□ -0.43
TNFRSF1A-202ENST00000366159 ITPR3Q14573 2671 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 A6NNC1 897 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 ALG1L2C9J202 215 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 LINC01387J3KSC0 135 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 ANGPTL1O95841 491 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 ACP2P11117 423 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 PEPDP12955 493 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 ASMTP46597 345 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 DGKQP52824 942 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 SUCLG1P53597 346 aaKnown RBP12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 MANFP55145 182 aaKnown RBP12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 C17orf67Q0P5P2 114 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 GRAMD1BQ3KR37 738 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 GALNTL6Q49A17 601 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 C6orf136Q5SQH8 315 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 MFSD12Q6NUT3 480 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 ZCCHC12Q6PEW1 402 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 LRIG3Q6UXM1 1119 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 EXOC3L1Q86VI1 746 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 DDIASQ8IXT1 998 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 OR4C3Q8NH37 302 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 ZFP28Q8NHY6 868 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 PSMA8Q8TAA3 256 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 INTS12Q96CB8 462 aaKnown RBP12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 PPP3R2Q96LZ3 170 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 GPATCH1Q9BRR8 931 aaKnown RBP12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 LIME1Q9H400 295 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 C3orf14Q9HBI5 128 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 SH3BP4Q9P0V3 963 aa12.35□□□□□ -0.43
TNFRSF1A-202ENST00000366159 NF1P21359 2839 aa12.34□□□□□ -0.43
TNFRSF1A-202ENST00000366159 OR2M5A3KFT3 312 aa12.34□□□□□ -0.43
TNFRSF1A-202ENST00000366159 A8MXE2 369 aa12.34□□□□□ -0.43
TNFRSF1A-202ENST00000366159 H0YC42 278 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms