RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 IFNGR2P38484 337 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 SRP9P49458 86 aaKnown RBP11.36□□□□□ -0.59
CLIP3-201ENST00000360535 OR10A3P58181 314 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 ST3GAL3Q11203 375 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 TPBGQ13641 420 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 ELAVL3Q14576 367 aaKnown RBP11.36□□□□□ -0.59
CLIP3-201ENST00000360535 SYT9Q86SS6 491 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 FBXL6Q8N531 539 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 SAMD12Q8N8I0 201 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 CYB561A3Q8NBI2 242 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 KCT2Q8NC54 265 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 HINT3Q9NQE9 182 aaKnown RBP11.36□□□□□ -0.59
CLIP3-201ENST00000360535 ACSS1Q9NUB1 689 aaPredicted RBP11.36□□□□□ -0.59
CLIP3-201ENST00000360535 KLHL28Q9NXS3 571 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 SPHK1Q9NYA1 384 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 ZNF222Q9UK12 451 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 INMT-MINDY4F8WBC2 141 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 CDC42EP2O14613 210 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 MAGEB4O15481 346 aaPredicted RBP11.36□□□□□ -0.59
CLIP3-201ENST00000360535 LANCL1O43813 399 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 ADH1CP00326 375 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 HLA-DPB1P04440 258 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 CSNK2A2P19784 350 aaPredicted RBP11.36□□□□□ -0.59
CLIP3-201ENST00000360535 ALAS2P22557 587 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 GAS1P54826 345 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 FAPQ12884 760 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 MLF2Q15773 248 aaPredicted RBP11.36□□□□□ -0.59
CLIP3-201ENST00000360535 SMUG1Q53HV7 270 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 SHISA5Q8N114 240 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 SIRT6Q8N6T7 355 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.36□□□□□ -0.59
CLIP3-201ENST00000360535 CDS1Q92903 461 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 PELI2Q9HAT8 420 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 ATP13A2Q9NQ11 1180 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 GNB5O14775 395 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 MID1O15344 667 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 EEF1E1O43324 174 aaKnown RBP11.35□□□□□ -0.59
CLIP3-201ENST00000360535 AKAP8O43823 692 aaKnown RBP11.35□□□□□ -0.59
CLIP3-201ENST00000360535 OR2B3O76000 313 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 HIST1H1TP22492 207 aaPredicted RBP11.35□□□□□ -0.59
CLIP3-201ENST00000360535 PRR5P85299 388 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 PRDX1Q06830 199 aaKnown RBP11.35□□□□□ -0.59
CLIP3-201ENST00000360535 TSPAN31Q12999 210 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 AGERQ15109 404 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 BCL2L15Q5TBC7 163 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 METRNLQ641Q3 311 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 RPTNQ6XPR3 784 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 RAB42Q8N4Z0 105 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 OR2A1Q8NGT9 310 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 RNF170Q96K19 258 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 ZFP3Q96NJ6 502 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 TEX12Q9BXU0 123 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 SLC38A1Q9H2H9 487 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 RBFOX1Q9NWB1 397 aaKnown RBP11.35□□□□□ -0.59
CLIP3-201ENST00000360535 A0A0A6YYD5 115 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 CENPVL1A0A0U1RR11 272 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 EDDM13A0A1B0GTR0 161 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 TMEM129A0AVI4 362 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 SLC9A3R1O14745 358 aaPredicted RBP11.35□□□□□ -0.59
CLIP3-201ENST00000360535 SCO2O43819 266 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 FKTNO75072 461 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 SYPP08247 313 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 EVX1P49640 407 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 ANKRD33Q7Z3H0 272 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 MRPL43Q8N983 215 aaKnown RBP11.35□□□□□ -0.59
CLIP3-201ENST00000360535 OR4E2Q8NGC2 313 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 CAMK1GQ96NX5 476 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 RNF32Q9H0A6 362 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 ENKD1Q9H0I2 346 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 SYNPO2LQ9H987 977 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 ADAP2Q9NPF8 381 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 ING3Q9NXR8 418 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 TBX21Q9UL17 535 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 SIRT4Q9Y6E7 314 aaPredicted RBP11.35□□□□□ -0.59
CLIP3-201ENST00000360535 ZNF780BQ9Y6R6 833 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 SZT2Q5T011 3432 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 SDK1Q7Z5N4 2213 aa11.35□□□□□ -0.59
CLIP3-201ENST00000360535 ERVH48-1M5A8F1 160 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 GTPBP1O00178 669 aaKnown RBP11.34□□□□□ -0.59
CLIP3-201ENST00000360535 ASGR2P07307 311 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 CLTBP09497 229 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 MPIP34949 423 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 SNRPNP63162 240 aaKnown RBP11.34□□□□□ -0.59
CLIP3-201ENST00000360535 SIM1P81133 766 aaPredicted RBP11.34□□□□□ -0.59
CLIP3-201ENST00000360535 DSG2Q14126 1118 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 BHLHB9Q6PI77 547 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 MTSS1LQ765P7 747 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 CXXC5Q7LFL8 322 aaKnown RBP11.34□□□□□ -0.59
CLIP3-201ENST00000360535 TMEM99Q8N816 258 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 OR51A7Q8NH64 312 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 RFKQ969G6 155 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 SLC41A3Q96GZ6 507 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 PINK1Q9BXM7 581 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 UCKL1Q9NWZ5 548 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 SPEGQ15772 3267 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 A0A0B4J203 849 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 A0A0G2JPF8 293 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 A0A1W2PP55 124 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 CENPBD1B2RD01 187 aa11.34□□□□□ -0.59
CLIP3-201ENST00000360535 HNRNPCL2B2RXH8 293 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms