RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 GPR68Q15743 365 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 EXT1Q16394 746 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 COQ5Q5HYK3 327 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 TUBA3EQ6PEY2 450 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 TSEN54Q7Z6J9 526 aaKnown RBP3.7□□□□□ -1.82
LIG4-201ENST00000356922 MARCH3Q86UD3 253 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 VRK2Q86Y07 508 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 RAB43Q86YS6 212 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 LACC1Q8IV20 430 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 LGI4Q8N135 537 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 RBMXL3Q8N7X1 1067 aaKnown RBP3.7□□□□□ -1.82
LIG4-201ENST00000356922 CDRT4Q8N9R6 151 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 SMYD1Q8NB12 490 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 NUBPLQ8TB37 319 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 ADAMTS15Q8TE58 950 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 HGDQ93099 445 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 SLC35G5Q96KT7 338 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 THTPAQ9BU02 230 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 C3orf14Q9HBI5 128 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 SH2D2AQ9NP31 389 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 KLHL1Q9NR64 748 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 CBLCQ9ULV8 474 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 NTNG1Q9Y2I2 539 aa3.7□□□□□ -1.82
LIG4-201ENST00000356922 NPIPB9F8W1W9 429 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 GMNNO75496 209 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 REM1O75628 298 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 PGM3O95394 542 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 STAMBPO95630 424 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 IGHEP01854 428 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 KRT16P08779 473 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 CYP4B1P13584 511 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 PRG2P13727 222 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 KRT20P35900 424 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 GAS1P54826 345 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 LSM11P83369 360 aaKnown RBP eCLIP3.69□□□□□ -1.82
LIG4-201ENST00000356922 PMP22Q01453 160 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 BIKQ13323 160 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 ST3GAL2Q16842 350 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 NADK2Q4G0N4 442 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 DCST2Q5T1A1 773 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 GPR32P1Q8NGA4 272 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 OR56A1Q8NGH5 318 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 OR8K3Q8NH51 312 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 ZFP28Q8NHY6 868 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 WDR60Q8WVS4 1066 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 APOBEC4Q8WW27 367 aaKnown RBP3.69□□□□□ -1.82
LIG4-201ENST00000356922 ROPN1LQ96C74 230 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 CCDC124Q96CT7 223 aaKnown RBP3.69□□□□□ -1.82
LIG4-201ENST00000356922 NTNG2Q96CW9 530 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 GNRHR2Q96P88 292 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 BTBD10Q9BSF8 475 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 CXorf56Q9H5V9 222 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 DUSP22Q9NRW4 184 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.69□□□□□ -1.82
LIG4-201ENST00000356922 ADA2Q9NZK5 511 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 SLC7A8Q9UHI5 535 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 TP53TG5Q9Y2B4 290 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 OR10H1Q9Y4A9 318 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 SVEP1Q4LDE5 3571 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 FASNP49327 2511 aaKnown RBP3.69□□□□□ -1.82
LIG4-201ENST00000356922 DYTNA2CJ06 578 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 FRG2CA6NGY1 282 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 BBIP1A8MTZ0 92 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 ACOT8O14734 319 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 TO15178 435 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 FADS1O60427 444 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 CYC1P08574 325 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 CELA3AP09093 270 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 CASP3P42574 277 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 DNASE1L1P49184 302 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 PCBP3P57721 371 aaKnown RBP3.69□□□□□ -1.82
LIG4-201ENST00000356922 TMPRSS3P57727 454 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 DSTNP60981 165 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 TOMM34Q15785 309 aaPredicted RBP3.69□□□□□ -1.82
LIG4-201ENST00000356922 ZSCAN26Q16670 478 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 GRAMD1BQ3KR37 738 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 PLEKHN1Q494U1 663 aaPredicted RBP3.69□□□□□ -1.82
LIG4-201ENST00000356922 AGAP7PQ5VUJ5 663 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 AP1ARQ63HQ0 302 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 IGFL2Q6UWQ7 119 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 CYP2R1Q6VVX0 501 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 HACD2Q6Y1H2 254 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 SLC29A4Q7RTT9 530 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 PGAM4Q8N0Y7 254 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 COX18Q8N8Q8 333 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 WDSUB1Q8N9V3 476 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 PCYOX1LQ8NBM8 494 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 OR8J3Q8NGG0 315 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 SFXN5Q8TD22 340 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 DIO2Q92813 273 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 TAMM41Q96BW9 452 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 FER1L6-AS2Q96M78 137 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 AGAP4Q96P64 663 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 TAAR6Q96RI8 345 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 SMAD5Q99717 465 aaKnown RBP3.69□□□□□ -1.82
LIG4-201ENST00000356922 FAM117AQ9C073 453 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 ZNF350Q9GZX5 532 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 ALG2Q9H553 416 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 TNFRSF10DQ9UBN6 386 aa3.69□□□□□ -1.82
LIG4-201ENST00000356922 FAF1Q9UNN5 650 aaPredicted RBP3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms