RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 LIMK1P53667 647 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 GFERP55789 205 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 RAB38P57729 211 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 OR1D5P58170 312 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 GPLD1P80108 840 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 BNC1Q01954 994 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 SRSF5Q13243 272 aaKnown RBP11.98□□□□□ -0.49
CLK3-201ENST00000345005 FAM53BQ14153 422 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 IRF3Q14653 427 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 SHBQ15464 509 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 SYT16Q17RD7 645 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 PLK5Q496M5 336 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 SMUG1Q53HV7 270 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 ARMCX4Q5H9R4 360 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 GARNL3Q5VVW2 1013 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 NKAIN2Q5VXU1 208 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 SLC44A2Q8IWA5 706 aaPredicted RBP11.98□□□□□ -0.49
CLK3-201ENST00000345005 ANKK1Q8NFD2 765 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 IL17RDQ8NFM7 739 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 CAPSLQ8WWF8 208 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 GEMIN6Q8WXD5 167 aaKnown RBP11.98□□□□□ -0.49
CLK3-201ENST00000345005 TRIM63Q969Q1 353 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 COL26A1Q96A83 441 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 BARD1Q99728 777 aaKnown RBP11.98□□□□□ -0.49
CLK3-201ENST00000345005 SLC30A2Q9BRI3 323 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 TMEM74BQ9NUR3 256 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 IMPAD1Q9NX62 359 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 ASXL3Q9C0F0 2248 aa11.98□□□□□ -0.49
CLK3-201ENST00000345005 IGHV5-51A0A0C4DH38 117 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 ARRDC5A6NEK1 342 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 SGK494L7N484 410 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 NDUFB5O43674 189 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 SCO2O43819 266 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 SLITRK5O94991 958 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 GPR75O95800 540 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 GIMD1P0DJR0 217 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 MC3RP41968 323 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 SLC15A1P46059 708 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 RPS5P46782 204 aaKnown RBP11.97□□□□□ -0.49
CLK3-201ENST00000345005 GABRA4P48169 554 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 OR2B6P58173 313 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 CDC42P60953 191 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 LASP1Q14847 261 aaKnown RBP11.97□□□□□ -0.49
CLK3-201ENST00000345005 IQCCQ4KMZ1 466 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 C19orf48Q6RUI8 117 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 GDPD3Q7L5L3 318 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 CCDC71Q8IV32 467 aaPredicted RBP11.97□□□□□ -0.49
CLK3-201ENST00000345005 SLC7A5P1Q8MH63 180 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 SIMC1Q8NDZ2 872 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 OR5T3Q8NGG3 340 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 OR9A4Q8NGU2 314 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 TTC9Q92623 222 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 KAT2AQ92830 837 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 TRNT1Q96Q11 434 aaKnown RBP11.97□□□□□ -0.49
CLK3-201ENST00000345005 DUSP23Q9BVJ7 150 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 SYNDIG1Q9H7V2 258 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 THSD1Q9NS62 852 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 NLGN3Q9NZ94 848 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 PTGFRNQ9P2B2 879 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 HYKKA2RU49 373 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 BLACEA4D250 179 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 DUXAA6NLW8 204 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 CENPXA8MT69 81 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 NOTOA8MTQ0 251 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 FAM25AB3EWG3 89 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 FAM25CB3EWG5 89 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 FAM25GB3EWG6 89 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 DSCR3O14972 297 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 CHST10O43529 356 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 RDH16O75452 317 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 PIPP12273 146 aaPredicted RBP11.97□□□□□ -0.49
CLK3-201ENST00000345005 RNH1P13489 461 aaKnown RBP11.97□□□□□ -0.49
CLK3-201ENST00000345005 PTGER1P34995 402 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 CRISP3P54108 245 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 SHC2P98077 582 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 SF3B4Q15427 424 aaKnown RBP eCLIP11.97□□□□□ -0.492e-6■■■■□ 20.4
CLK3-201ENST00000345005 LTB4RQ15722 352 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 SYPL1Q16563 259 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 PRAMEF8Q5VWM4 474 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 PRAMEF7Q5VXH5 474 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 OR4N5Q8IXE1 308 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 UBQLNLQ8IYU4 475 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 MAML2Q8IZL2 1156 aaPredicted RBP11.97□□□□□ -0.49
CLK3-201ENST00000345005 LGI4Q8N135 537 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 OR5D16Q8NGK9 328 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 GRPEL2Q8TAA5 225 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 ADAMTS18Q8TE60 1221 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 Q96MT0 163 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 TREX2Q9BQ50 279 aaPredicted RBP11.97□□□□□ -0.49
CLK3-201ENST00000345005 SPATA5L1Q9BVQ7 753 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 ACTRT3Q9BYD9 372 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 TP63Q9H3D4 680 aaPredicted RBP11.97□□□□□ -0.49
CLK3-201ENST00000345005 BCL2L10Q9HD36 194 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 CLN6Q9NWW5 311 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 NDUFAF4Q9P032 175 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 LIPT1Q9Y234 373 aa11.97□□□□□ -0.49
CLK3-201ENST00000345005 A0A0G2JPF8 293 aa11.96□□□□□ -0.49
CLK3-201ENST00000345005 A0A1B0GTQ1 180 aa11.96□□□□□ -0.49
CLK3-201ENST00000345005 HNRNPCL2B2RXH8 293 aa11.96□□□□□ -0.49
CLK3-201ENST00000345005 HNRNPCL3B7ZW38 293 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms