RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 RHBDD2Q6NTF9 364 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 PODNL1Q6PEZ8 512 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 KLHL17Q6TDP4 642 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 MED25Q71SY5 747 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 ZNF615Q8N8J6 731 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 PTPMT1Q8WUK0 201 aaPredicted RBP12.42□□□□□ -0.42
HMGB1-202ENST00000339872 HRASLS5Q96KN8 279 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 ITPAQ9BY32 194 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 Q9N2J8 555 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 MKKSQ9NPJ1 570 aaPredicted RBP12.42□□□□□ -0.42
HMGB1-202ENST00000339872 POLE3Q9NRF9 147 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 CTSFQ9UBX1 484 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 RARRES3Q9UL19 164 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 HSPE1-MOB4S4R3N1 261 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 SCRG1O75711 98 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 ADAP00813 363 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 CRHBPP24387 322 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 TRHRP34981 398 aaPredicted RBP12.42□□□□□ -0.42
HMGB1-202ENST00000339872 EFNA3P52797 238 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 UGT2B15P54855 530 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 CDK5R2Q13319 367 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 ENTPD8Q5MY95 495 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 LAIR2Q6ISS4 152 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 PLEKHM3Q6ZWE6 761 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 CCDC71Q8IV32 467 aaPredicted RBP12.42□□□□□ -0.42
HMGB1-202ENST00000339872 TMEM151BQ8IW70 566 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 ZNF614Q8N883 585 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 MCHR1Q99705 422 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 FAM192AQ9GZU8 254 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 TUBA8Q9NY65 449 aaPredicted RBP12.42□□□□□ -0.42
HMGB1-202ENST00000339872 AASSQ9UDR5 926 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 ENOPH1Q9UHY7 261 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 MKL2Q9ULH7 1088 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 MGAT4BQ9UQ53 548 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 NTNG1Q9Y2I2 539 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 PCDHGA6Q9Y5G7 932 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 CLCA3PQ9Y6N3 262 aa12.42□□□□□ -0.42
HMGB1-202ENST00000339872 FRYLO94915 3013 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 COL5A1P20908 1838 aaPredicted RBP12.41□□□□□ -0.42
HMGB1-202ENST00000339872 SEC16AO15027 2179 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 E9PQ18 207 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 DYRK3O43781 588 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 IGKV1D-16P01601 117 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 CLPSP04118 112 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 CT45A8P0DMV1 189 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 CT45A9P0DMV2 189 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 HLCSP50747 726 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 NUP107P57740 925 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 NSDHLQ15738 373 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 CT45A2Q5DJT8 189 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 PWWP2BQ6NUJ5 590 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 PGBD2Q6P3X8 592 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 PARP8Q8N3A8 854 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 ZNF321PQ8N8H1 164 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 SLC38A9Q8NBW4 561 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 OR4K5Q8NGD3 323 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 ADAMTS16Q8TE57 1224 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 FBLIM1Q8WUP2 373 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 NR4A3Q92570 626 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 DIO2Q92813 273 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 SENP5Q96HI0 755 aaPredicted RBP12.41□□□□□ -0.42
HMGB1-202ENST00000339872 OR8D2Q9GZM6 311 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 RASSF1Q9NS23 344 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 SEMA4GQ9NTN9 838 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 PRODH2Q9UF12 536 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 OR10H1Q9Y4A9 318 aa12.41□□□□□ -0.42
HMGB1-202ENST00000339872 TCRBV16S1A1N1A0A5B0 115 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 D6RAR5 112 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 SLC1A7O00341 560 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 KHNYNO15037 678 aaKnown RBP12.4□□□□□ -0.42
HMGB1-202ENST00000339872 ANGPTL1O95841 491 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 IFNA8P32881 189 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 GGT2P36268 569 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 TARDBPQ13148 414 aaKnown RBP eCLIP12.4□□□□□ -0.42
HMGB1-202ENST00000339872 MAD2L1BPQ15013 274 aaPredicted RBP12.4□□□□□ -0.42
HMGB1-202ENST00000339872 SHISA6Q6ZSJ9 500 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 COX15Q7KZN9 410 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 LAPTM4BQ86VI4 370 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 SLITRK4Q8IW52 837 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 BPIFB6Q8NFQ5 453 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 OR7G1Q8NGA0 311 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 FAM81AQ8TBF8 368 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 ATOH1Q92858 354 aaPredicted RBP12.4□□□□□ -0.42
HMGB1-202ENST00000339872 PMM1Q92871 262 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 FKBP10Q96AY3 582 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 UCK2Q9BZX2 261 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 VN1R1Q9GZP7 353 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 SIDT1Q9NXL6 827 aaKnown RBP12.4□□□□□ -0.42
HMGB1-202ENST00000339872 FTSJ1Q9UET6 329 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 BLOC1S6Q9UL45 172 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 ASCC3Q8N3C0 2202 aaKnown RBP12.4□□□□□ -0.42
HMGB1-202ENST00000339872 CDHR4A6H8M9 788 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 TRIM64CA6NLI5 447 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 CYP7B1O75881 506 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 OR6B1O95007 311 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 GKN3PP0CG01 181 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 FMO3P31513 532 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 IDH2P48735 452 aaKnown RBP12.4□□□□□ -0.42
HMGB1-202ENST00000339872 ST3GAL3Q11203 375 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 TOP3AQ13472 1001 aaPredicted RBP12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms