RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 OR12D1P0DN82 309 aa14.53□□□□□ -0.08
CCDC28A-201ENST00000332797 ATP6V1C1P21283 382 aa14.53□□□□□ -0.08
CCDC28A-201ENST00000332797 HSF1Q00613 529 aa14.53□□□□□ -0.08
CCDC28A-201ENST00000332797 UBAP2LQ14157 1087 aaKnown RBP14.53□□□□□ -0.08
CCDC28A-201ENST00000332797 HYAL4Q2M3T9 481 aa14.53□□□□□ -0.08
CCDC28A-201ENST00000332797 KRTCAP3Q53RY4 240 aa14.53□□□□□ -0.08
CCDC28A-201ENST00000332797 BNC2Q6ZN30 1099 aaPredicted RBP14.53□□□□□ -0.08
CCDC28A-201ENST00000332797 SPATA21Q7Z572 469 aa14.53□□□□□ -0.08
CCDC28A-201ENST00000332797 MTERF4Q7Z6M4 381 aaKnown RBP14.53□□□□□ -0.08
CCDC28A-201ENST00000332797 ZFP90Q8TF47 636 aa14.53□□□□□ -0.08
CCDC28A-201ENST00000332797 RAB8BQ92930 207 aa14.53□□□□□ -0.08
CCDC28A-201ENST00000332797 NTNG2Q96CW9 530 aa14.53□□□□□ -0.08
CCDC28A-201ENST00000332797 ELAC2Q9BQ52 826 aaKnown RBP14.53□□□□□ -0.08
CCDC28A-201ENST00000332797 PAIP1Q9H074 479 aaKnown RBP14.53□□□□□ -0.08
CCDC28A-201ENST00000332797 SLC52A3Q9NQ40 469 aa14.53□□□□□ -0.08
CCDC28A-201ENST00000332797 UBR5O95071 2799 aaPredicted RBP14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 A0A1W2PP18 115 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 GMNCA6NCL1 334 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 SNPHO15079 494 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 PDE9AO76083 593 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 KRT75O95678 551 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 CELA3AP09093 270 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 ZCCHC18P0CG32 403 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 DRD4P21917 467 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 GDF1P27539 372 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 PTPN6P29350 595 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 CLK3P49761 638 aaKnown RBP14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 STX5Q13190 355 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 PAGE3Q5JUK9 113 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 ATAD3BQ5T9A4 648 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 FNDC7Q5VTL7 733 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 C16orf62Q7Z3J2 963 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 CPLX4Q7Z7G2 160 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 GHDCQ8N2G8 530 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 OR1J4Q8NGS1 313 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 RNF138Q8WVD3 245 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 XAGE5Q8WWM1 108 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 AURKBQ96GD4 344 aaPredicted RBP14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 GNRHR2Q96P88 292 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 PHF12Q96QT6 1004 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 TBL1XR1Q9BZK7 514 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 ZDHHC11Q9H8X9 412 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 SAR1AQ9NR31 198 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 MRGBPQ9NV56 204 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 EXD2Q9NVH0 621 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 C15orf41Q9Y2V0 281 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 HRH3Q9Y5N1 445 aa14.52□□□□□ -0.08
CCDC28A-201ENST00000332797 GCN1Q92616 2671 aaKnown RBP14.52□□□□□ -0.09
CCDC28A-201ENST00000332797 A0A096LPI6 279 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 NPIPA5A0A0B4J1W7 369 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 C17orf51A8MQB3 221 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 NPIPA7E9PJI5 369 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 ANGPT2O15123 496 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 OXSR1O95747 527 aaPredicted RBP14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 AGR2O95994 175 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 NPIPA8P0DM63 369 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 ELAVL4P26378 380 aaKnown RBP14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 LCN1P31025 176 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 ANXA11P50995 505 aaKnown RBP14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 GAS1P54826 345 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 TOMM20Q15388 145 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 EIF2S3LQ2VIR3 472 aaKnown RBP14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 COX20Q5RI15 118 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 TIGD3Q6B0B8 471 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 MARCH3Q86UD3 253 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 CHDHQ8NE62 594 aaPredicted RBP14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 OR4C3Q8NH37 302 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 TPT1P8Q9HAU6 139 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 PPP4R1LQ9P1A2 415 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 LEF1Q9UJU2 399 aaPredicted RBP14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 PCDHB14Q9Y5E9 798 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 LIPGQ9Y5X9 500 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 TENM4Q6N022 2769 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 NBASA2RRP1 2371 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 NINQ8N4C6 2090 aa14.51□□□□□ -0.09
CCDC28A-201ENST00000332797 HMGN4O00479 90 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 ZNHIT1O43257 154 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 AK1P00568 194 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 SNRPB2P08579 225 aaKnown RBP14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 HPGDP15428 266 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 TBXA2RP21731 343 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 RBPJQ06330 500 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 KLF10Q13118 480 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 SLC10A1Q14973 349 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 ARHGAP11BQ3KRB8 267 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 FLYWCH1Q4VC44 716 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 LRIF1Q5T3J3 769 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 OR5M10Q6IEU7 315 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 OLIG3Q7RTU3 272 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 PLCZ1Q86YW0 608 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 WDSUB1Q8N9V3 476 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 PRR7Q8TB68 274 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 SDF2Q99470 211 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 RTN4RQ9BZR6 473 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 NMUR2Q9GZQ4 415 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 UBQLN4Q9NRR5 601 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 FAM53CQ9NYF3 392 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 SLAMF8Q9P0V8 285 aa14.5□□□□□ -0.09
CCDC28A-201ENST00000332797 OSGIN2Q9Y236 505 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms