RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 STK17BO94768 372 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 UNC50Q53HI1 259 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 GPR137CQ8N3F9 429 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 GLIS1Q8NBF1 620 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 OR4K13Q8NH42 304 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 GPR148Q8TDV2 347 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 SCO2O43819 266 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 RAB3AP20336 220 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 GIFP27352 417 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 FLT3LGP49771 235 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 OR4Q3Q8NH05 313 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 ZBTB8AQ96BR9 441 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 PINK1Q9BXM7 581 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 ANKRD26Q9UPS8 1709 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 HPGDSO60760 199 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 ZFAND1Q8TCF1 268 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 RANBP9Q96S59 729 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 ARHGAP39Q9C0H5 1083 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 FAM212BQ9NTI7 297 aaPredicted RBP13.16□□□□□ -0.3
CSPG4-201ENST00000308508 DVL2O14641 736 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 ARHGEF15O94989 841 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 GJA5P36382 358 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 MMP12P39900 470 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 LACC1Q8IV20 430 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 IL17RDQ8NFM7 739 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 ZNF286AQ9HBT8 521 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 AGAP14A8MT82 685 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 TNFSF12O43508 249 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 HLA-AP01891 365 aaKnown RBP13.16□□□□□ -0.3
CSPG4-201ENST00000308508 LPLP06858 475 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 SSTR4P31391 388 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 IFNL1Q8IU54 200 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 TBC1D20Q96BZ9 403 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 HOXD1Q9GZZ0 328 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 CERS4Q9HA82 394 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 NOX3Q9HBY0 568 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 IL20RAQ9UHF4 553 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 BHLHE40O14503 412 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 TPPPO94811 219 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 RPS5P46782 204 aaKnown RBP13.16□□□□□ -0.3
CSPG4-201ENST00000308508 TAS2R19P59542 299 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 AVPI1Q5T686 147 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 GDF6Q6KF10 455 aaPredicted RBP13.16□□□□□ -0.3
CSPG4-201ENST00000308508 CERS5Q8N5B7 392 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 UPRTQ96BW1 309 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 ZNF75AQ96N20 296 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 DEFB118Q96PH6 123 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 COPS3Q9UNS2 423 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 KCNK6Q9Y257 313 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 ADGRB1O14514 1584 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 TLE1Q04724 770 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 EOGTQ5NDL2 527 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 OR52E8Q6IFG1 317 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 ZNF705AQ6ZN79 300 aaPredicted RBP13.16□□□□□ -0.3
CSPG4-201ENST00000308508 METTL2AQ96IZ6 378 aaKnown RBP13.16□□□□□ -0.3
CSPG4-201ENST00000308508 NICN1Q9BSH3 213 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 ADAM19Q9H013 955 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 GHRLQ9UBU3 117 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 AK6Q9Y3D8 172 aaKnown RBP13.16□□□□□ -0.3
CSPG4-201ENST00000308508 ENPP4Q9Y6X5 453 aa13.16□□□□□ -0.3
CSPG4-201ENST00000308508 CFIP05156 583 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 PNMTP11086 282 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 ZNF439Q8NDP4 499 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 DBF4BQ8NFT6 615 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 OR56B4Q8NH76 319 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 ST7LQ8TDW4 575 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 PITHD1Q9GZP4 211 aaPredicted RBP13.15□□□□□ -0.3
CSPG4-201ENST00000308508 FANCGO15287 622 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 HTR3BO95264 441 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 TBPL1P62380 186 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 ARHGAP19Q14CB8 494 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 CATSPEREQ5SY80 951 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 METTL2BQ6P1Q9 378 aaKnown RBP13.15□□□□□ -0.3
CSPG4-201ENST00000308508 MEX3BQ6ZN04 569 aaKnown RBP13.15□□□□□ -0.3
CSPG4-201ENST00000308508 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.15□□□□□ -0.3
CSPG4-201ENST00000308508 OR52N2Q8NGI0 321 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 PGAP3Q96FM1 320 aaPredicted RBP13.15□□□□□ -0.3
CSPG4-201ENST00000308508 C1orf74Q96LT6 269 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 NMNAT2Q9BZQ4 307 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 HAO2Q9NYQ3 351 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 A6NHS1 94 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 TRIM23P36406 574 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 OGDHQ02218 1023 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 SLC5A8Q8N695 610 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 FBXL18Q96ME1 805 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 MTHFD2LQ9H903 347 aaPredicted RBP13.15□□□□□ -0.3
CSPG4-201ENST00000308508 THSD1Q9NS62 852 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 ETV5P41161 510 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 TAS2R38P59533 333 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 SPOCK1Q08629 439 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 OR9A4Q8NGU2 314 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 PTCHD1Q96NR3 888 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 SLC2A4RGQ9NR83 387 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 NINQ8N4C6 2090 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 PDE4DIPQ5VU43 2346 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 CDHR4A6H8M9 788 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 TAP2Q03519 686 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 RAB40BQ12829 278 aa13.15□□□□□ -0.3
CSPG4-201ENST00000308508 UBXN2BQ14CS0 331 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms