RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 METTL8Q9H825 291 aaKnown RBP14.51□□□□□ -0.09
SHH-201ENST00000297261 A0A1B0GTL3 188 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 ARPC1BO15143 372 aaKnown RBP14.51□□□□□ -0.09
SHH-201ENST00000297261 KCNK5O95279 499 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 GASTP01350 101 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 ID2Q02363 134 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 KCNC3Q14003 757 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 ELAVL3Q14576 367 aaKnown RBP14.51□□□□□ -0.09
SHH-201ENST00000297261 SLC5A12Q1EHB4 618 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 CTSL3PQ5NE16 218 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 FAM122CQ6P4D5 195 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 GALNT7Q86SF2 657 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 PSD2Q9BQI7 771 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 C14orf105Q9NVL8 296 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 TXNL4BQ9NX01 149 aaKnown RBP14.51□□□□□ -0.09
SHH-201ENST00000297261 GSKIPQ9P0R6 139 aa14.51□□□□□ -0.09
SHH-201ENST00000297261 MRPS33Q9Y291 106 aaKnown RBP14.51□□□□□ -0.09
SHH-201ENST00000297261 AK6Q9Y3D8 172 aaKnown RBP14.51□□□□□ -0.09
SHH-201ENST00000297261 FAM183AA6NL82 134 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 GNSP15586 552 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 GIPRP48546 466 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 DBPQ10586 325 aaPredicted RBP14.5□□□□□ -0.09
SHH-201ENST00000297261 HES5Q5TA89 166 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 XAF1Q6GPH4 301 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 GALNT13Q8IUC8 556 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 C16orf78Q8WTQ4 265 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 SPRYD4Q8WW59 207 aaPredicted RBP14.5□□□□□ -0.09
SHH-201ENST00000297261 C5orf34Q96MH7 638 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 CSF3RQ99062 836 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 ERVK-19Q9WJR5 959 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 ATP6V1G2-DDX39BF2Z307 99 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 BLOC1S5-TXNDC5H3BN57 136 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 VNN2O95498 520 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 CFL1P23528 166 aaKnown RBP14.5□□□□□ -0.09
SHH-201ENST00000297261 MASP1P48740 699 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 EIF5AP63241 154 aaKnown RBP14.5□□□□□ -0.09
SHH-201ENST00000297261 HBA1P69905 142 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 ARFRP1Q13795 201 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 TRAM1L1Q8N609 369 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 OR2L3Q8NG85 312 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 OR4F15Q8NGB8 312 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 OR56A1Q8NGH5 318 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 ZNF350Q9GZX5 532 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 NIPAL2Q9H841 368 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 ARHGEF15O94989 841 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 KAT7O95251 611 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 C1QAP02745 245 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 MT-ND4P03905 459 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 HTR2AP28223 471 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 PTH2RP49190 550 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 BTN3A2P78410 334 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 ERN2Q76MJ5 926 aaKnown RBP14.5□□□□□ -0.09
SHH-201ENST00000297261 HERVK_113Q902F9 699 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 ISG20Q96AZ6 181 aaKnown RBP14.5□□□□□ -0.09
SHH-201ENST00000297261 TESCQ96BS2 214 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 WDR26Q9H7D7 661 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 SCP2D1Q9UJQ7 156 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 PCDHGA6Q9Y5G7 932 aa14.5□□□□□ -0.09
SHH-201ENST00000297261 HOXC11O43248 304 aaPredicted RBP14.49□□□□□ -0.09
SHH-201ENST00000297261 GPR37L1O60883 481 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 PAK4O96013 591 aaPredicted RBP14.49□□□□□ -0.09
SHH-201ENST00000297261 B3GALT4O96024 378 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 PTGER1P34995 402 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 S100A10P60903 97 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 ITPRIPL2Q3MIP1 535 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 CREB3L2Q70SY1 520 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 FGF13Q92913 245 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 SOHLH2Q9NX45 425 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 TMPRSS11EQ9UL52 423 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 NUBP2Q9Y5Y2 271 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 PRSS21Q9Y6M0 314 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 ZNF670-ZNF695F2Z2N8 137 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 SCGNO76038 276 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 SOX30O94993 753 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 FARS2O95363 451 aaKnown RBP14.49□□□□□ -0.09
SHH-201ENST00000297261 CBLP22681 906 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 GRPRP30550 384 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 OC90Q02509 493 aaPredicted RBP14.49□□□□□ -0.09
SHH-201ENST00000297261 CDC20Q12834 499 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 GPNMBQ14956 572 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 KLHL24Q6TFL4 600 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 BBS10Q8TAM1 723 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 FBXL12Q9NXK8 326 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 NDRG2Q9UN36 371 aaKnown RBP14.49□□□□□ -0.09
SHH-201ENST00000297261 PADI2Q9Y2J8 665 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 POLR1CO15160 346 aaPredicted RBP14.49□□□□□ -0.09
SHH-201ENST00000297261 AKR7A2O43488 359 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 HRGP04196 525 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 HTR1AP08908 422 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 CTSEP14091 401 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 ZNF14P17017 642 aaPredicted RBP14.49□□□□□ -0.09
SHH-201ENST00000297261 RPS25P62851 125 aaKnown RBP14.49□□□□□ -0.09
SHH-201ENST00000297261 RUNX3Q13761 415 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 TCEAL5Q5H9L2 206 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 MS4A15Q8N5U1 240 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 ZNF436Q9C0F3 470 aaPredicted RBP14.49□□□□□ -0.09
SHH-201ENST00000297261 CENPMQ9NSP4 180 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 POLHQ9Y253 713 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 PCDHGA2Q9Y5H1 932 aa14.49□□□□□ -0.09
SHH-201ENST00000297261 TFPIP10646 304 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms