RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 C6P13671 934 aa9.37□□□□□ -0.91
COL6A3-201ENST00000295550 FASLGP48023 281 aa9.37□□□□□ -0.91
COL6A3-201ENST00000295550 ARSDP51689 593 aa9.37□□□□□ -0.91
COL6A3-201ENST00000295550 RNF4P78317 190 aa9.37□□□□□ -0.91
COL6A3-201ENST00000295550 GRM2Q14416 872 aa9.37□□□□□ -0.91
COL6A3-201ENST00000295550 TIGD3Q6B0B8 471 aa9.37□□□□□ -0.91
COL6A3-201ENST00000295550 TRMT10AQ8TBZ6 339 aaKnown RBP9.37□□□□□ -0.91
COL6A3-201ENST00000295550 ZNF736B4DX44 427 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-201ENST00000295550 MRPS14O60783 128 aaKnown RBP9.36□□□□□ -0.91
COL6A3-201ENST00000295550 B4GALT2O60909 372 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 CAPNS1P04632 268 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 GCGRP47871 477 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 POU6F2P78424 691 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-201ENST00000295550 APOFQ13790 326 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 LRIT3Q3SXY7 679 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 HIST2H3PS2Q5TEC6 136 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 C3P1Q6ZMU1 363 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 ABHD11Q8NFV4 315 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 ZNF778Q96MU6 729 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 ZNF681Q96N22 645 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 TMEM14AQ9Y6G1 99 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 LCMT2O60294 686 aaKnown RBP9.36□□□□□ -0.91
COL6A3-201ENST00000295550 CLN5O75503 358 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 RPS26P62854 115 aaKnown RBP9.36□□□□□ -0.91
COL6A3-201ENST00000295550 OR4Q3Q8NH05 313 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 G6PC3Q9BUM1 346 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 ASB4Q9Y574 426 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 CFAP20Q9Y6A4 193 aaKnown RBP9.36□□□□□ -0.91
COL6A3-201ENST00000295550 PTGESO14684 152 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 STSP08842 583 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 GGT5P36269 586 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 CLCNKAP51800 687 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 SNU13P55769 128 aaKnown RBP9.36□□□□□ -0.91
COL6A3-201ENST00000295550 TICAM1Q8IUC6 712 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 OR12D1P0DN82 309 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 CRHR2Q13324 411 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 HES5Q5TA89 166 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 SLC18B1Q6NT16 456 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 MCHR1Q99705 422 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 HINT2Q9BX68 163 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 MYOFQ9NZM1 2061 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 ATP6V1G2-DDX39BF2Z307 99 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 GJA5P36382 358 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 SLAMF1Q13291 335 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 SFRP4Q6FHJ7 346 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-201ENST00000295550 TRAPPC6BQ86SZ2 158 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 LILRB4Q8NHJ6 448 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 FNDC9Q8TBE3 224 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 FAM46AQ96IP4 442 aaKnown RBP9.36□□□□□ -0.91
COL6A3-201ENST00000295550 BTBD2Q9BX70 525 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 KCNIP1Q9NZI2 227 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 MBLAC1A4D2B0 266 aaPredicted RBP9.36□□□□□ -0.91
COL6A3-201ENST00000295550 CA5AP35218 305 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 MALLQ13021 153 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 TANGO2Q6ICL3 276 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 GLYATL1Q969I3 302 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 SLC19A3Q9BZV2 496 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 SERTAD4Q9NUC0 356 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 FAM86C1Q9NVL1 165 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 B3GNT2Q9NY97 397 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 SLC6A5Q9Y345 797 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 PCDHGA2Q9Y5H1 932 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 GTF2H4Q92759 462 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 SLC6A16Q9GZN6 736 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 KLHL13Q9P2N7 655 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 ENPP5Q9UJA9 477 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 PLAGL1Q9UM63 463 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 BACE2Q9Y5Z0 518 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 POM121CA8CG34 1229 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 SOX9P48436 509 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 UBE2NLQ5JXB2 153 aa9.36□□□□□ -0.91
COL6A3-201ENST00000295550 EDDM13A0A1B0GTR0 161 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 SCAF4O95104 1147 aaKnown RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 C8AP07357 584 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 MPC1LP0DKB6 136 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 RPP30P78346 268 aaKnown RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 GALK2Q01415 458 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ARHGAP40Q5TG30 622 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 KDELC1Q6UW63 502 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 WDR20Q8TBZ3 569 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 TMEM125Q96AQ2 219 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 DPH2Q9BQC3 489 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 CARS2Q9HA77 564 aaKnown RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 PRDM9Q9NQV7 894 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 NAP1L6A6NFF2 107 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 EIF3FO00303 357 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 CRTAPO75718 401 aaPredicted RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 GPR4P46093 362 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ZNF84P51523 738 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 MRPL49Q13405 166 aaKnown RBP9.35□□□□□ -0.91
COL6A3-201ENST00000295550 HMGN3Q15651 99 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 GKN1Q9NS71 199 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 A0A1W2PS29 197 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 PTPN2P17706 415 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 NDUFS1P28331 727 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 RAB30Q15771 203 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ZNF75AQ96N20 296 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 B4DGG1 531 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 ZNF623O75123 536 aa9.35□□□□□ -0.91
COL6A3-201ENST00000295550 KNG1P01042 644 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms