RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 PRG2P13727 222 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 GABRG2P18507 467 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 TLX1P31314 330 aaPredicted RBP18.72■□□□□ 0.59
VPS53-201ENST00000291074 MXD1Q05195 221 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 ZNF628Q5EBL2 1059 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 AGAP7PQ5VUJ5 663 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 RNLSQ5VYX0 342 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 TM9SF4Q92544 642 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 SDF2Q99470 211 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 TPK1Q9H3S4 243 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 SLC7A7Q9UM01 511 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 PCDHGB6Q9Y5F9 930 aa18.72■□□□□ 0.59
VPS53-201ENST00000291074 SPIN1Q9Y657 262 aaPredicted RBP18.72■□□□□ 0.59
VPS53-201ENST00000291074 TNFRSF10CO14798 259 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 MED26O95402 600 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 SPNP16150 400 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 SHC2P98077 582 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 KHDRBS1Q07666 443 aaKnown RBP eCLIP18.71■□□□□ 0.59
VPS53-201ENST00000291074 ILF3Q12906 894 aaKnown RBP eCLIP18.71■□□□□ 0.59
VPS53-201ENST00000291074 ARHGAP11BQ3KRB8 267 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 USP53Q70EK8 1073 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 MRGPREQ86SM8 312 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 PEX5LQ8IYB4 626 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 CAMKVQ8NCB2 501 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 TWSG1Q9GZX9 223 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 MTHFD2LQ9H903 347 aaPredicted RBP18.71■□□□□ 0.59
VPS53-201ENST00000291074 SMURF1Q9HCE7 757 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 HYKKA2RU49 373 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 PLD2O14939 933 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 HCRTR1O43613 425 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 AKT2P31751 481 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 ABHD13Q7L211 337 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 CCDC190Q86UF4 302 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 GJD3Q8N144 294 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 GATAD2BQ8WXI9 593 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 CPNE7Q9UBL6 633 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 SPTBP11277 2137 aa18.71■□□□□ 0.59
VPS53-201ENST00000291074 GKN3PP0CG01 181 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 MYL12AP19105 171 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 DRD1P21728 446 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 MTNR1AP48039 350 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 ZNF136P52737 540 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 EXOSC7Q15024 291 aaKnown RBP18.7■□□□□ 0.58
VPS53-201ENST00000291074 DECR1Q16698 335 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 SPANXN2Q5MJ10 180 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 ZNF438Q7Z4V0 828 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 OR9Q1Q8NGQ5 310 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 RERGQ96A58 199 aaPredicted RBP18.7■□□□□ 0.58
VPS53-201ENST00000291074 SLC38A2Q96QD8 506 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 GAS2L1Q99501 681 aaPredicted RBP18.7■□□□□ 0.58
VPS53-201ENST00000291074 RACGAP1Q9H0H5 632 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 TRIM45Q9H8W5 580 aaPredicted RBP18.7■□□□□ 0.58
VPS53-201ENST00000291074 URADA6NGE7 173 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 ZNF670-ZNF695F2Z2N8 137 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 CDC42EP2O14613 210 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 RGS5O15539 181 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 SLC2A10O95528 541 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 FUT1P19526 365 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 NT5EP21589 574 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 IFNA8P32881 189 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 KLHL22Q53GT1 634 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 C3orf38Q5JPI3 329 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 FHL5Q5TD97 284 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 POGLUT1Q8NBL1 392 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 NR4A3Q92570 626 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 SDHCQ99643 169 aaPredicted RBP18.7■□□□□ 0.58
VPS53-201ENST00000291074 HRASLS2Q9NWW9 162 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 ERVK13-1Q9NX77 482 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 PTGFRNQ9P2B2 879 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 CD207Q9UJ71 328 aa18.7■□□□□ 0.58
VPS53-201ENST00000291074 ISPDA4D126 451 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 PEX12O00623 359 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 CTSBP07858 339 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 FPR3P25089 353 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 WNT4P56705 351 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 EEF1A1P68104 462 aaKnown RBP18.69■□□□□ 0.58
VPS53-201ENST00000291074 MRPS21P82921 87 aaKnown RBP18.69■□□□□ 0.58
VPS53-201ENST00000291074 DBPQ10586 325 aaPredicted RBP18.69■□□□□ 0.58
VPS53-201ENST00000291074 LARS2Q15031 903 aaKnown RBP18.69■□□□□ 0.58
VPS53-201ENST00000291074 RAB30Q15771 203 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 MINDY4Q4G0A6 757 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 SAMD14Q8IZD0 417 aaPredicted RBP18.69■□□□□ 0.58
VPS53-201ENST00000291074 ZFP41Q8N8Y5 198 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 ZBTB8BQ8NAP8 495 aaPredicted RBP18.69■□□□□ 0.58
VPS53-201ENST00000291074 BBS1Q8NFJ9 593 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 CEP19Q96LK0 163 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 NELL2Q99435 816 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 PHOX2BQ99453 314 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 ANKRD19PQ9H560 264 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 SACM1LQ9NTJ5 587 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 C14orf119Q9NWQ9 140 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 KCNE5Q9UJ90 142 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 SSR3Q9UNL2 185 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 SMIM30A4D0T7 59 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 KDM4EB2RXH2 506 aaPredicted RBP18.69■□□□□ 0.58
VPS53-201ENST00000291074 SEMA4FO95754 770 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 DLGAP3O95886 979 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 TNFSF8P32971 234 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 LTBRP36941 435 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 RAB40BQ12829 278 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms