RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ALPK3Q96L96 1907 aa15.54■□□□□ 0.08
VPS54-201ENST00000272322 THY1P04216 161 aa15.54■□□□□ 0.08
VPS54-201ENST00000272322 SAGP10523 405 aaPredicted RBP15.54■□□□□ 0.08
VPS54-201ENST00000272322 APEX1P27695 318 aaKnown RBP15.54■□□□□ 0.08
VPS54-201ENST00000272322 ZNF45Q02386 682 aa15.54■□□□□ 0.08
VPS54-201ENST00000272322 BHLHB9Q6PI77 547 aa15.54■□□□□ 0.08
VPS54-201ENST00000272322 SYCE2Q6PIF2 218 aa15.54■□□□□ 0.08
VPS54-201ENST00000272322 SPATA5L1Q9BVQ7 753 aa15.54■□□□□ 0.08
VPS54-201ENST00000272322 ISG20L2Q9H9L3 353 aaKnown RBP15.54■□□□□ 0.08
VPS54-201ENST00000272322 C20orf141Q9NUB4 165 aa15.54■□□□□ 0.08
VPS54-201ENST00000272322 STUB1Q9UNE7 303 aa15.54■□□□□ 0.08
VPS54-201ENST00000272322 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.54■□□□□ 0.08
VPS54-201ENST00000272322 SLC35G6P0C7Q6 338 aa15.54■□□□□ 0.08
VPS54-201ENST00000272322 GCGRP47871 477 aa15.54■□□□□ 0.08
VPS54-201ENST00000272322 FABP5Q01469 135 aa15.54■□□□□ 0.08
VPS54-201ENST00000272322 PDZK1Q5T2W1 519 aa15.54■□□□□ 0.08
VPS54-201ENST00000272322 C6orf183Q5T699 404 aa15.54■□□□□ 0.08
VPS54-201ENST00000272322 PPP2R2DQ66LE6 453 aa15.54■□□□□ 0.08
VPS54-201ENST00000272322 TMEM52Q8NDY8 209 aa15.54■□□□□ 0.08
VPS54-201ENST00000272322 TRIM45Q9H8W5 580 aaPredicted RBP15.54■□□□□ 0.08
VPS54-201ENST00000272322 TRAV27A0A087WT01 109 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 HCCSP53701 268 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 SNRPGP62308 76 aaKnown RBP15.53■□□□□ 0.08
VPS54-201ENST00000272322 ELOAQ14241 798 aaKnown RBP15.53■□□□□ 0.08
VPS54-201ENST00000272322 ZNF181Q2M3W8 571 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 ASPGQ86U10 573 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 RBM12BQ8IXT5 1001 aaKnown RBP15.53■□□□□ 0.08
VPS54-201ENST00000272322 IL17RCQ8NAC3 791 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 ATP6V1C2Q8NEY4 427 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 PIGXQ8TBF5 258 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 SLC41A3Q96GZ6 507 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 C1QTNF2Q9BXJ5 285 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 CCDC86Q9H6F5 360 aaKnown RBP15.53■□□□□ 0.08
VPS54-201ENST00000272322 LSM2Q9Y333 95 aaKnown RBP15.53■□□□□ 0.08
VPS54-201ENST00000272322 MRPS14O60783 128 aaKnown RBP15.53■□□□□ 0.08
VPS54-201ENST00000272322 GSTT2P0CG29 244 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 GSTT2BP0CG30 244 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 CPMP14384 443 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 PXNP49023 591 aaPredicted RBP15.53■□□□□ 0.08
VPS54-201ENST00000272322 GPR18Q14330 331 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 PUS10Q3MIT2 529 aaKnown RBP15.53■□□□□ 0.08
VPS54-201ENST00000272322 PROKR2Q8NFJ6 384 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 PTCHD1Q96NR3 888 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 SLC38A2Q96QD8 506 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 TAPBPLQ9BX59 468 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 TRIOBPQ9H2D6 2365 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 GDE1Q9NZC3 331 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 AP1M2Q9Y6Q5 423 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 SAGE2PA6NJ88 616 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 LRRN3E7EW58 273 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 H3BQ06 376 aaPredicted RBP15.53■□□□□ 0.08
VPS54-201ENST00000272322 SGK494L7N484 410 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 TAF4O00268 1085 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 SLITRK5O94991 958 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 OXSR1O95747 527 aaPredicted RBP15.53■□□□□ 0.08
VPS54-201ENST00000272322 LARS2Q15031 903 aaKnown RBP15.53■□□□□ 0.08
VPS54-201ENST00000272322 TRAM2Q15035 370 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 GDF7Q7Z4P5 450 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 ZAR1Q86SH2 424 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 MARCH9Q86YJ5 346 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 OR10H4Q8NGA5 316 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 ITFG2Q969R8 447 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 HCAR1Q9BXC0 346 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 LRRN3Q9H3W5 708 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 WBP1LQ9NX94 342 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 SEC14L4Q9UDX3 406 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 TBC1D24Q9ULP9 559 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 COLEC10Q9Y6Z7 277 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 MUC3AQ02505 3323 aa15.53■□□□□ 0.08
VPS54-201ENST00000272322 ADH1BP00325 375 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 NTSR1P30989 418 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 IFNA8P32881 189 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 FRKP42685 505 aaPredicted RBP15.52■□□□□ 0.08
VPS54-201ENST00000272322 VSX2P58304 361 aaPredicted RBP15.52■□□□□ 0.08
VPS54-201ENST00000272322 RGS1Q08116 209 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 ST3GAL3Q11203 375 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 DUSP6Q16828 381 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 C1orf94Q6P1W5 598 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 SYT9Q86SS6 491 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 CCDC190Q86UF4 302 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 TTYH2Q9BSA4 534 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 NLGN3Q9NZ94 848 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 CRNNQ9UBG3 495 aaPredicted RBP15.52■□□□□ 0.08
VPS54-201ENST00000272322 UBXN7O94888 489 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 MSL3P1P0C860 447 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 IFI30P13284 250 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 WNT4P56705 351 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 RAB15P59190 212 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 RHAGQ02094 409 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 ZNF79Q15937 498 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 LRIT3Q3SXY7 679 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 RPTNQ6XPR3 784 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 TRIM69Q86WT6 500 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 NRROSQ86YC3 692 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 LRRC25Q8N386 305 aaPredicted RBP15.52■□□□□ 0.08
VPS54-201ENST00000272322 OR4K14Q8NGD5 310 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 OR56A1Q8NGH5 318 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 SPRYD4Q8WW59 207 aaPredicted RBP15.52■□□□□ 0.08
VPS54-201ENST00000272322 RLN3Q8WXF3 142 aa15.52■□□□□ 0.08
VPS54-201ENST00000272322 RIPOR3Q96MK2 946 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms