RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 PRAMEF4O60810 478 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 SNAPC5O75971 98 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 CD3GP09693 182 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 ACP2P11117 423 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 CELP19835 753 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 DRD5P21918 477 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 MAPK9P45984 424 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 LIM2P55344 173 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 CDK6Q00534 326 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 SF1Q15637 639 aaKnown RBP12.33□□□□□ -0.44
NUP54-201ENST00000264883 DCST1Q5T197 706 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 PRAMEF9Q5VWM5 478 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 FUT10Q6P4F1 479 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 SEZ6L2Q6UXD5 910 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 CCDC36Q8IYA8 594 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 ALG14Q96F25 216 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 DMRTA2Q96SC8 542 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 BABAM2Q9NXR7 383 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 EMC3Q9P0I2 261 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 ZFR2Q9UPR6 939 aaKnown RBP12.33□□□□□ -0.44
NUP54-201ENST00000264883 PPIL1Q9Y3C6 166 aa12.33□□□□□ -0.44
NUP54-201ENST00000264883 CHURC1-FNTBB4DL54 471 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 MCRIP1C9JLW8 97 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 CACNB4O00305 520 aaPredicted RBP12.32□□□□□ -0.44
NUP54-201ENST00000264883 RNGTTO60942 597 aaKnown RBP12.32□□□□□ -0.44
NUP54-201ENST00000264883 MT-ND4P03905 459 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 GALTP07902 379 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 CLTBP09497 229 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 LIMS3P0CW19 117 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 LIMS4P0CW20 117 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 TIA1P31483 386 aaKnown RBP eCLIP12.32□□□□□ -0.44
NUP54-201ENST00000264883 VIPR1P32241 457 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 ERVK-25P63136 954 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 TSC22D1Q15714 1073 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 SLC25A30Q5SVS4 291 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 HBMQ6B0K9 141 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 CNKSR3Q6P9H4 555 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.32□□□□□ -0.444e-6■□□□□ 8.6
NUP54-201ENST00000264883 TMPRSS9Q7Z410 1059 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 LHFPL3Q86UP9 236 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 NR2C2APQ86WQ0 139 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 TMEM151BQ8IW70 566 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 LILRB2Q8N423 598 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 TM6SF2Q9BZW4 377 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 NKIRAS2Q9NYR9 191 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 CHST2Q9Y4C5 530 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 PEX14O75381 377 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 SIX6O95475 246 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 EFEMP2O95967 443 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 RECKO95980 971 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 S100A6P06703 90 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 FABP1P07148 127 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 OR12D1P0DN82 309 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 NPR2P20594 1047 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 S100A11P31949 105 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 RAE1P78406 368 aaKnown RBP12.32□□□□□ -0.44
NUP54-201ENST00000264883 B4GALNT1Q00973 533 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 PLD1Q13393 1074 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 SPOUT1Q5T280 376 aaKnown RBP12.32□□□□□ -0.44
NUP54-201ENST00000264883 RSPO2Q6UXX9 243 aaPredicted RBP12.32□□□□□ -0.44
NUP54-201ENST00000264883 Q6ZTK2 550 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 RAB11FIP2Q7L804 512 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 PRICKLE2Q7Z3G6 844 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 THOC6Q86W42 341 aaKnown RBP12.32□□□□□ -0.44
NUP54-201ENST00000264883 TMEM173Q86WV6 379 aaPredicted RBP12.32□□□□□ -0.44
NUP54-201ENST00000264883 SLITRK4Q8IW52 837 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 PAWRQ96IZ0 340 aaKnown RBP12.32□□□□□ -0.44
NUP54-201ENST00000264883 C10orf90Q96M02 699 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 TREX2Q9BQ50 279 aaPredicted RBP12.32□□□□□ -0.44
NUP54-201ENST00000264883 C20orf85Q9H1P6 137 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 REEP4Q9H6H4 257 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 C11orf49Q9H6J7 331 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 MRPS18AQ9NVS2 196 aaKnown RBP12.32□□□□□ -0.44
NUP54-201ENST00000264883 TINAGQ9UJW2 476 aa12.32□□□□□ -0.44
NUP54-201ENST00000264883 ARAFP10398 606 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 IRF1P10914 325 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 ATP1B2P14415 290 aaPredicted RBP12.31□□□□□ -0.44
NUP54-201ENST00000264883 RAB3BP20337 219 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 ELAVL4P26378 380 aaKnown RBP12.31□□□□□ -0.44
NUP54-201ENST00000264883 MC2RQ01718 297 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 DOC2AQ14183 400 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 GK2Q14410 553 aaPredicted RBP12.31□□□□□ -0.44
NUP54-201ENST00000264883 GINS1Q14691 196 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 HFEQ30201 348 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 PGBD2Q6P3X8 592 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 CORO6Q6QEF8 472 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 CRTC1Q6UUV9 634 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 NAXDQ8IW45 347 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 CMIPQ8IY22 773 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 SLC35A5Q9BS91 424 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 GKN1Q9NS71 199 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 CFAP97Q9P2B7 532 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 MGAT4CQ9UBM8 478 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 PRKAG2Q9UGJ0 569 aa12.31□□□□□ -0.44
NUP54-201ENST00000264883 PRR23D1E9PI22 279 aaPredicted RBP12.3□□□□□ -0.44
NUP54-201ENST00000264883 FAAHO00519 579 aa12.3□□□□□ -0.44
NUP54-201ENST00000264883 SUSD5O60279 629 aa12.3□□□□□ -0.44
NUP54-201ENST00000264883 PRR23D2P0DMB1 279 aaPredicted RBP12.3□□□□□ -0.44
NUP54-201ENST00000264883 CD22P20273 847 aa12.3□□□□□ -0.44
NUP54-201ENST00000264883 ITGB8P26012 769 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms