RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 RFKQ969G6 155 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 CNRIP1Q96F85 164 aaPredicted RBP11.86□□□□□ -0.51
LIG1-201ENST00000263274 OR7D2Q96RA2 312 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 INSM2Q96T92 566 aaPredicted RBP11.86□□□□□ -0.51
LIG1-201ENST00000263274 TMEM106CQ9BVX2 250 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 ZNF304Q9HCX3 659 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 ADAP2Q9NPF8 381 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 FZD3Q9NPG1 666 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 MAN2C1Q9NTJ4 1040 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 EXOSC1Q9Y3B2 195 aaKnown RBP11.86□□□□□ -0.51
LIG1-201ENST00000263274 THSD7BQ9C0I4 1608 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 EYSQ5T1H1 3165 aa11.86□□□□□ -0.51
LIG1-201ENST00000263274 GNB5O14775 395 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 VEGFDO43915 354 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 PAPLNO95428 1278 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 ITGB8P26012 769 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 NOS3P29474 1203 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 SOX9P48436 509 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 PPM1FP49593 454 aaPredicted RBP11.85□□□□□ -0.51
LIG1-201ENST00000263274 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.85□□□□□ -0.511e-7■■□□□ 12.5
LIG1-201ENST00000263274 GLYR1Q49A26 553 aaPredicted RBP11.85□□□□□ -0.51
LIG1-201ENST00000263274 C3orf38Q5JPI3 329 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 TMEM201Q5SNT2 666 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 UBE3DQ7Z6J8 389 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 SAMD12Q8N8I0 201 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 LINC01555Q8NAE3 123 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 TMEM255BQ8WV15 326 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 DEDD2Q8WXF8 326 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 EPHX3Q9H6B9 360 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 C6orf106Q9H6K1 298 aaPredicted RBP11.85□□□□□ -0.51
LIG1-201ENST00000263274 NPAP1Q9NZP6 1156 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 ERVH48-1M5A8F1 160 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 LILRB3O75022 631 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 OR2B3O76000 313 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 TP53P04637 393 aaPredicted RBP11.85□□□□□ -0.51
LIG1-201ENST00000263274 SAGP10523 405 aaPredicted RBP11.85□□□□□ -0.51
LIG1-201ENST00000263274 ITGB7P26010 798 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 MPIP34949 423 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 TRHRP34981 398 aaPredicted RBP11.85□□□□□ -0.51
LIG1-201ENST00000263274 ELAVL3Q14576 367 aaKnown RBP11.85□□□□□ -0.51
LIG1-201ENST00000263274 HNRNPA1L2Q32P51 320 aaKnown RBP11.85□□□□□ -0.51
LIG1-201ENST00000263274 ENTPD8Q5MY95 495 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 C1orf94Q6P1W5 598 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 SPRED2Q7Z698 418 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 CYB561A3Q8NBI2 242 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 OR8H1Q8NGG4 311 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 DHRS9Q9BPW9 319 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 DPH1Q9BZG8 443 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 ISG20L2Q9H9L3 353 aaKnown RBP11.85□□□□□ -0.51
LIG1-201ENST00000263274 GPR34Q9UPC5 381 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 DOCK9Q9BZ29 2069 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 A0A0B4J293 547 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 A0A0G2JMP0 313 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 A0A0X1KG70 313 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 C17orf113A0A1B0GUU1 675 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 LRIT2A6NDA9 550 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 SPINT1O43278 529 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 AIFM1O95831 613 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 PAHP00439 452 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 BMP7P18075 431 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 CDK3Q00526 305 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 GNA13Q14344 377 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 CDONQ4KMG0 1287 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 COL13A1Q5TAT6 717 aaPredicted RBP11.85□□□□□ -0.51
LIG1-201ENST00000263274 PSRC1Q6PGN9 363 aaPredicted RBP11.85□□□□□ -0.51
LIG1-201ENST00000263274 OR4M2Q8NGB6 313 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 OR4E2Q8NGC2 313 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 OR51A7Q8NH64 312 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 RNF31Q96EP0 1072 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 MBNL1Q9NR56 388 aaKnown RBP11.85□□□□□ -0.51
LIG1-201ENST00000263274 ZSCAN32Q9NX65 697 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 TAS2R7Q9NYW3 318 aa11.85□□□□□ -0.51
LIG1-201ENST00000263274 DAPL1A0PJW8 107 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 OTOL1A6NHN0 477 aaPredicted RBP11.84□□□□□ -0.51
LIG1-201ENST00000263274 C1QTNF3-AMACRE9PGA6 284 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 J3QLW9 94 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 SLC31A1O15431 190 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 EEF1E1O43324 174 aaKnown RBP11.84□□□□□ -0.51
LIG1-201ENST00000263274 ORC5O43913 435 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 GYPBP06028 91 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 ZNF19P17023 458 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 SHC1P29353 583 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 GABRA5P31644 462 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 BCL6P41182 706 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 P2RY2P41231 377 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 RPS5P46782 204 aaKnown RBP11.84□□□□□ -0.51
LIG1-201ENST00000263274 OR3A3P47888 321 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 CDK5Q00535 292 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 DSG2Q14126 1118 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 ZSWIM7Q19AV6 140 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 MINDY4Q4G0A6 757 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 TMEFF1Q8IYR6 380 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 SLC16A11Q8NCK7 471 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 PCNPQ8WW12 178 aaKnown RBP11.84□□□□□ -0.51
LIG1-201ENST00000263274 ACSS1Q9NUB1 689 aaPredicted RBP11.84□□□□□ -0.51
LIG1-201ENST00000263274 TESQ9UGI8 421 aaKnown RBP11.84□□□□□ -0.51
LIG1-201ENST00000263274 ADAM30Q9UKF2 790 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 SLC7A7Q9UM01 511 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 TRIOBPQ9H2D6 2365 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 EDDM13A0A1B0GTR0 161 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms