RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 RNH1P13489 461 aaKnown RBP12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 OMPP47874 163 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 PPM1FP49593 454 aaPredicted RBP12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 POU6F2P78424 691 aaPredicted RBP12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 ZNF91Q05481 1191 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 SNAPC1Q16533 368 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 PRTGQ2VWP7 1150 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 ACSM5Q6NUN0 579 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 USP43Q70EL4 1123 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 NKAIN4Q8IVV8 208 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 TMCO5AQ8N6Q1 288 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 CADM4Q8NFZ8 388 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 PIK3R3Q92569 461 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 FAM46AQ96IP4 442 aaKnown RBP12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 SLC38A3Q99624 504 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 MGLLQ99685 303 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 POLR2J2Q9GZM3 115 aaKnown RBP12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 RACGAP1Q9H0H5 632 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 ARMC7Q9H6L4 198 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 EGLN3Q9H6Z9 239 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 CNIH4Q9P003 139 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 OSGIN1Q9UJX0 560 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 ERGIC3Q9Y282 383 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 NTNG1Q9Y2I2 539 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 THADAQ6YHU6 1953 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 A0A0A6YYC8 382 aaPredicted RBP12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 BLACEA4D250 179 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 KRBA1A5PL33 1030 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 LILRA5A6NI73 299 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 SNTNA6NMZ2 147 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 I3L1I5 382 aaPredicted RBP12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 KIAA0513O60268 411 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 CTSBP07858 339 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 ADRA2AP08913 450 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 NID1P14543 1247 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 FPR3P25089 353 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 GABRA3P34903 492 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 STAT5AP42229 794 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 RACK1P63244 317 aaKnown RBP12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 RHAGQ02094 409 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 ZNF155Q12901 538 aaPredicted RBP12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 TMED1Q13445 227 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 FZD5Q13467 585 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 NR1D2Q14995 579 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 TIMM50Q3ZCQ8 353 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 ANKDD1AQ495B1 522 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 SYT14P1Q58G82 188 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 MBOAT2Q6ZWT7 520 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 MEX3DQ86XN8 651 aaKnown RBP12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 SLC34A3Q8N130 599 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 VWA5B2Q8N398 1253 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 KBTBD8Q8NFY9 601 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 OSTF1Q92882 214 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 LRR1Q96L50 414 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 SLC38A2Q96QD8 506 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 OR5M11Q96RB7 305 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 MAP3K3Q99759 626 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 MND1Q9BWT6 205 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 TEX12Q9BXU0 123 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 PLA2G12AQ9BZM1 189 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 ZBTB20Q9HC78 741 aaPredicted RBP12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 FBXO8Q9NRD0 319 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 POLE3Q9NRF9 147 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 NLGN3Q9NZ94 848 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 SLC7A7Q9UM01 511 aa12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 MRPS33Q9Y291 106 aaKnown RBP12.04□□□□□ -0.48
SPTLC1-201ENST00000262554 LOC100506127A0A0U1RQW1 187 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 CENPVL1A0A0U1RR11 272 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 J3QRK9 145 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 CCRL2O00421 344 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 MAOBP27338 520 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 TGFBR1P36897 503 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 MAP3K8P41279 467 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 ZNF136P52737 540 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 EFNB1P98172 346 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 MLLT1Q03111 559 aaPredicted RBP12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 MAP4K2Q12851 820 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 SLC13A2Q13183 592 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 MAPK14Q16539 360 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 MRPL2Q5T653 305 aaKnown RBP12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 RNLSQ5VYX0 342 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 SLC36A4Q6YBV0 504 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 BCDIN3DQ7Z5W3 292 aaKnown RBP12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 MRGPREQ86SM8 312 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 OR52R1Q8NGF1 315 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 TMEM163Q8TC26 289 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 ADAMTS18Q8TE60 1221 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 TMEM255BQ8WV15 326 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 ZNF582Q96NG8 517 aaPredicted RBP12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 MIR1-1HGQ9H1L0 117 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 CHRDQ9H2X0 955 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 DSN1Q9H410 356 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 HCN3Q9P1Z3 774 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 B3GNT3Q9Y2A9 372 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 PCDHGA3Q9Y5H0 932 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 CORINQ9Y5Q5 1042 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 PMF1-BGLAPU3KQ54 211 aa12.03□□□□□ -0.48
SPTLC1-201ENST00000262554 hCG_2014768A0A024R1R8 64 aa12.02□□□□□ -0.48
SPTLC1-201ENST00000262554 IRGMA1A4Y4 181 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms