RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 ALOX12BO75342 701 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 TNFRSF21O75509 655 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 OR5F1O95221 314 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 UBL4AP11441 157 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 SLC6A8P48029 635 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 LSM3P62310 102 aaKnown RBP10.81□□□□□ -0.68
VPS4A-201ENST00000254950 BTG2P78543 158 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 HOXC5Q00444 222 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 VWA2Q5GFL6 755 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 MRPL2Q5T653 305 aaKnown RBP10.81□□□□□ -0.68
VPS4A-201ENST00000254950 SPRED1Q7Z699 444 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 CALHM3Q86XJ0 350 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 FANK1Q8TC84 345 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 DNAJA4Q8WW22 397 aaPredicted RBP10.81□□□□□ -0.68
VPS4A-201ENST00000254950 PHF21AQ96BD5 680 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 LCORQ96JN0 433 aaPredicted RBP10.81□□□□□ -0.68
VPS4A-201ENST00000254950 ANKRD60Q9BZ19 345 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 HSPE1-MOB4S4R3N1 261 aa10.81□□□□□ -0.68
VPS4A-201ENST00000254950 TDRD6O60522 2096 aaKnown RBP10.8□□□□□ -0.68
VPS4A-201ENST00000254950 UNC119BA6NIH7 251 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 UPK1AO00322 258 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 RENP00797 406 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 OSMP13725 252 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 MYF6P23409 242 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 PAX7P23759 505 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 PRKAR1BP31321 381 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 GPR4P46093 362 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 STT3AP46977 705 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 PDX1P52945 283 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 EEF1A2Q05639 463 aaKnown RBP10.8□□□□□ -0.68
VPS4A-201ENST00000254950 DGUOKQ16854 277 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 LUZP2Q86TE4 346 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 TSPYL5Q86VY4 417 aaPredicted RBP10.8□□□□□ -0.68
VPS4A-201ENST00000254950 KBTBD8Q8NFY9 601 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 OR2T33Q8NG76 320 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 OR8J1Q8NGP2 316 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 ADAMTS16Q8TE57 1224 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 ACOT11Q8WXI4 607 aaPredicted RBP10.8□□□□□ -0.68
VPS4A-201ENST00000254950 ZNF764Q96H86 408 aaPredicted RBP10.8□□□□□ -0.68
VPS4A-201ENST00000254950 MPP4Q96JB8 637 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 BRCA2P51587 3418 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 CDC14CA4D256 554 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 IDSB3KWA1 339 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 PRR23D1E9PI22 279 aaPredicted RBP10.8□□□□□ -0.68
VPS4A-201ENST00000254950 PLOD3O60568 738 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 KRT33AO76009 404 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 PRR23D2P0DMB1 279 aaPredicted RBP10.8□□□□□ -0.68
VPS4A-201ENST00000254950 GCGRP47871 477 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 PRSS41Q7RTY9 318 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 SLITRK4Q8IW52 837 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 SMOC1Q9H4F8 434 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 DNAJC27Q9NZQ0 273 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 MRPS2Q9Y399 296 aaKnown RBP10.8□□□□□ -0.68
VPS4A-201ENST00000254950 IGHEP01854 428 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 PABPC4LP0CB38 370 aaKnown RBP10.8□□□□□ -0.68
VPS4A-201ENST00000254950 CDH11P55287 796 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 TUBA4AP68366 448 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 MVKQ03426 396 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 DMWDQ09019 674 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 TAF13Q15543 124 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 RNF220Q5VTB9 566 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 MEDAGQ5VYS4 303 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 OLIG3Q7RTU3 272 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 UBE3DQ7Z6J8 389 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 AMER2Q8N7J2 671 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 OR6K6Q8NGW6 343 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 MOSPD2Q8NHP6 518 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 SLC7A7Q9UM01 511 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 ST14Q9Y5Y6 855 aa10.8□□□□□ -0.68
VPS4A-201ENST00000254950 TRMUO75648 421 aaKnown RBP10.79□□□□□ -0.68
VPS4A-201ENST00000254950 AVPR2P30518 371 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 STAT5AP42229 794 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 MYBPC1Q00872 1141 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 TRA2AQ13595 282 aaKnown RBP eCLIP10.79□□□□□ -0.68
VPS4A-201ENST00000254950 RAPSNQ13702 412 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.79□□□□□ -0.68
VPS4A-201ENST00000254950 MRM1Q6IN84 353 aaKnown RBP10.79□□□□□ -0.68
VPS4A-201ENST00000254950 RAB11FIP2Q7L804 512 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 TFAP2CQ92754 450 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 SLC35A4Q96G79 324 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 ITPAQ9BY32 194 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 TESQ9UGI8 421 aaKnown RBP10.79□□□□□ -0.68
VPS4A-201ENST00000254950 SSR3Q9UNL2 185 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 PATE3B3GLJ2 98 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 C16orf72Q14CZ0 275 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 INAQ16352 499 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 DUSP7Q16829 419 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 SLC35F1Q5T1Q4 408 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 PARP8Q8N3A8 854 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 DNAJC22Q8N4W6 341 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 OR10H4Q8NGA5 316 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 FAM46AQ96IP4 442 aaKnown RBP10.79□□□□□ -0.68
VPS4A-201ENST00000254950 SDF2Q99470 211 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 BCL2L10Q9HD36 194 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 THSD1Q9NS62 852 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 HPF1Q9NWY4 346 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 NDUFAF4Q9P032 175 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 DKKL1Q9UK85 242 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 TCF20Q9UGU0 1960 aaKnown RBP10.79□□□□□ -0.68
VPS4A-201ENST00000254950 IGKV1-8A0A0C4DH67 115 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms