RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 SPHK2Q9NRA0 654 aa11.23□□□□□ -0.61
USHBP1-201ENST00000252597 MRPL39Q9NYK5 338 aaKnown RBP11.23□□□□□ -0.61
USHBP1-201ENST00000252597 OR6C2Q9NZP2 312 aa11.23□□□□□ -0.61
USHBP1-201ENST00000252597 AK6Q9Y3D8 172 aaKnown RBP11.23□□□□□ -0.61
USHBP1-201ENST00000252597 TBC1D3BA6NDS4 549 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 QSOX1O00391 747 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 KIAA0355O15063 1070 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 UBXN7O94888 489 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 PAK4O96013 591 aaPredicted RBP11.22□□□□□ -0.61
USHBP1-201ENST00000252597 CPEP16870 476 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 IFNGR2P38484 337 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 VIPR2P41587 438 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 MAGEB1P43366 347 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 CCR8P51685 355 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 HMGA2P52926 109 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 CRYZQ08257 329 aaKnown RBP11.22□□□□□ -0.61
USHBP1-201ENST00000252597 FAAP20Q6NZ36 180 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 LYPD4Q6UWN0 246 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 LINGO2Q7L985 606 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 GPR155Q7Z3F1 870 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 METTL3Q86U44 580 aaKnown RBP11.22□□□□□ -0.61
USHBP1-201ENST00000252597 ADIPOR2Q86V24 386 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 TBC1D19Q8N5T2 526 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 RGMAQ96B86 450 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 ORAI3Q9BRQ5 295 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 TMEM175Q9BSA9 504 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 GPR174Q9BXC1 333 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 POLDIP3Q9BY77 421 aaKnown RBP11.22□□□□□ -0.61
USHBP1-201ENST00000252597 SLC35C2Q9NQQ7 365 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 FLVCR2Q9UPI3 526 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 MN1Q10571 1320 aaPredicted RBP11.22□□□□□ -0.61
USHBP1-201ENST00000252597 EIF4EP06730 217 aaKnown RBP11.22□□□□□ -0.61
USHBP1-201ENST00000252597 ATP12AP54707 1039 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 C12orf73Q69YU5 71 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 SIGIRRQ6IA17 410 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 HTR3DQ70Z44 454 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 CXXC5Q7LFL8 322 aaKnown RBP11.22□□□□□ -0.61
USHBP1-201ENST00000252597 CLDN22Q8N7P3 220 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 OR2T35Q8NGX2 323 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 TRMT10AQ8TBZ6 339 aaKnown RBP11.22□□□□□ -0.61
USHBP1-201ENST00000252597 RIT1Q92963 219 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 ATF6BQ99941 703 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 ZNF559Q9BR84 538 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 GON7Q9BXV9 100 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 RDH8Q9NYR8 311 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 FBXL4Q9UKA2 621 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 SLC7A7Q9UM01 511 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 PLEKHM1Q9Y4G2 1056 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 ATG4BQ9Y4P1 393 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 BRWD1Q9NSI6 2320 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 E9PI62 339 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 STOMP27105 288 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 GABRA5P31644 462 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 TRHRP34981 398 aaPredicted RBP11.22□□□□□ -0.61
USHBP1-201ENST00000252597 EVX1P49640 407 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 AGFG1P52594 562 aaKnown RBP11.22□□□□□ -0.61
USHBP1-201ENST00000252597 SLC9A5Q14940 896 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 FIGNL1Q6PIW4 674 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 ARL14Q8N4G2 192 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 ZNF655Q8N720 491 aaPredicted RBP11.22□□□□□ -0.61
USHBP1-201ENST00000252597 TMEM99Q8N816 258 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 RNF170Q96K19 258 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 HHIPQ96QV1 700 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 ALG8Q9BVK2 526 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 LGR4Q9BXB1 951 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 RBCK1Q9BYM8 510 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 OR10A4Q9H209 315 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 CERS4Q9HA82 394 aa11.22□□□□□ -0.61
USHBP1-201ENST00000252597 HINT3Q9NQE9 182 aaKnown RBP11.22□□□□□ -0.61
USHBP1-201ENST00000252597 SEC16AO15027 2179 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 TRAV27A0A087WT01 109 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 SOX30O94993 753 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 TBXA2RP21731 343 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 DNASE1P24855 282 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 ACSL1P33121 698 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 BTN3A2P78410 334 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 SIM1P81133 766 aaPredicted RBP11.21□□□□□ -0.61
USHBP1-201ENST00000252597 RAB33AQ14088 237 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 SLC25A35Q3KQZ1 300 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 GXYLT1Q4G148 440 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 TP53I3Q53FA7 332 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 TOR2AQ5JU69 321 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 MTSS1LQ765P7 747 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 GRASPQ7Z6J2 395 aaPredicted RBP11.21□□□□□ -0.61
USHBP1-201ENST00000252597 ZNF547Q8IVP9 402 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 FAM26EQ8N5C1 309 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 SIRT6Q8N6T7 355 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 OR4Q3Q8NH05 313 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 CXorf40AQ8TE69 158 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 RFKQ969G6 155 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 ZSWIM3Q96MP5 696 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 TMEM43Q9BTV4 400 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 GTF2A1LQ9UNN4 478 aa11.21□□□□□ -0.61
USHBP1-201ENST00000252597 PROM1O43490 865 aa11.21□□□□□ -0.62
USHBP1-201ENST00000252597 IRS1P35568 1242 aa11.21□□□□□ -0.62
USHBP1-201ENST00000252597 LIMS1P48059 325 aa11.21□□□□□ -0.62
USHBP1-201ENST00000252597 SOX9P48436 509 aa11.21□□□□□ -0.62
USHBP1-201ENST00000252597 E2F1Q01094 437 aa11.21□□□□□ -0.62
USHBP1-201ENST00000252597 BNC1Q01954 994 aa11.21□□□□□ -0.62
USHBP1-201ENST00000252597 RAB40BQ12829 278 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms