RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 BEX2Q9BXY8 128 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 PPP1R3EQ9H7J1 279 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 KRCC1Q9NPI7 259 aaPredicted RBP17.5■□□□□ 0.39
CPSF3-201ENST00000238112 LYARQ9NX58 379 aaKnown RBP17.5■□□□□ 0.39
CPSF3-201ENST00000238112 NLGN3Q9NZ94 848 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 BOLA1Q9Y3E2 137 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 GPSM3Q9Y4H4 160 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 NOX1Q9Y5S8 564 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 CSNK1G3Q9Y6M4 447 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 A0A0B4J293 547 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 DUXAA6NLW8 204 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 PIP5K1CO60331 668 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 OR5F1O95221 314 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 IGHA1P01876 353 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 HLA-DQB1P01920 261 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 PSKH1P11801 424 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 RACK1P63244 317 aaKnown RBP17.5■□□□□ 0.39
CPSF3-201ENST00000238112 BTN3A2P78410 334 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 ACSM1Q08AH1 577 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 ZNF155Q12901 538 aaPredicted RBP17.5■□□□□ 0.39
CPSF3-201ENST00000238112 CEBPEQ15744 281 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 FAM214AQ32MH5 1076 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 C1QTNF12Q5T7M4 302 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 MTSS1LQ765P7 747 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 HDDC3Q8N4P3 179 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 MFSD9Q8NBP5 474 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 RNF31Q96EP0 1072 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 SLC35A4Q96G79 324 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 POLMQ9NP87 494 aaPredicted RBP17.5■□□□□ 0.39
CPSF3-201ENST00000238112 SPHK1Q9NYA1 384 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 TNFRSF10DQ9UBN6 386 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 ADAM30Q9UKF2 790 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 POLHQ9Y253 713 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 PCDHGB7Q9Y5F8 929 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 PRR23AA6NEV1 266 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 CD8B2A6NJW9 211 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 PRICKLE3O43900 615 aaPredicted RBP17.49■□□□□ 0.39
CPSF3-201ENST00000238112 ZIC2O95409 532 aaPredicted RBP17.49■□□□□ 0.39
CPSF3-201ENST00000238112 HMGN1P05114 100 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 CD8BP10966 210 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 NDUFV2P19404 249 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 CPN2P22792 545 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 INPP1P49441 399 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 AGERQ15109 404 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 P2RY14Q15391 338 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 C6orf132Q5T0Z8 1188 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 SPRED2Q7Z698 418 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 GIMAP5Q96F15 307 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 SOSTQ9BQB4 213 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 RBFOX1Q9NWB1 397 aaKnown RBP17.49■□□□□ 0.39
CPSF3-201ENST00000238112 SERGEFQ9UGK8 458 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 ZNF443Q9Y2A4 671 aaPredicted RBP17.49■□□□□ 0.39
CPSF3-201ENST00000238112 CDH10Q9Y6N8 788 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 A0A1W2PP55 124 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 CENPBD1B2RD01 187 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 SLC2A10O95528 541 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 POU2F2P09086 479 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 GAAP10253 952 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 CFL1P23528 166 aaKnown RBP17.49■□□□□ 0.39
CPSF3-201ENST00000238112 PTBP1P26599 531 aaKnown RBP eCLIP17.49■□□□□ 0.39
CPSF3-201ENST00000238112 HLA-DMAP28067 261 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 TEAD1P28347 426 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 PEBP1P30086 187 aaKnown RBP17.49■□□□□ 0.39
CPSF3-201ENST00000238112 EVX1P49640 407 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 FGL2Q14314 439 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 TJAP1Q5JTD0 557 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 KLBQ86Z14 1044 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 COL26A1Q96A83 441 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 SARGQ9BW04 601 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 WDR70Q9NW82 654 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 ASB6Q9NWX5 421 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 CBLCQ9ULV8 474 aa17.49■□□□□ 0.39
CPSF3-201ENST00000238112 ISM1B1AKI9 464 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 KLF4O43474 513 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 THY1P04216 161 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 GCGRP47871 477 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 ERVK-21P61565 698 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 SGCGQ13326 291 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 INSL4Q14641 139 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 TATDN3Q17R31 274 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 PUS10Q3MIT2 529 aaKnown RBP17.48■□□□□ 0.39
CPSF3-201ENST00000238112 ZNF322Q6U7Q0 402 aaPredicted RBP17.48■□□□□ 0.39
CPSF3-201ENST00000238112 FRRS1Q6ZNA5 592 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 PEX5LQ8IYB4 626 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 SLC16A11Q8NCK7 471 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 DNAJA4Q8WW22 397 aaPredicted RBP17.48■□□□□ 0.39
CPSF3-201ENST00000238112 ZC3HAV1LQ96H79 300 aaKnown RBP17.48■□□□□ 0.39
CPSF3-201ENST00000238112 RNF170Q96K19 258 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 SAMD8Q96LT4 415 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 MS4A4EQ96PG1 132 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 SYNPO2LQ9H987 977 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 PLSCR3Q9NRY6 295 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 SLC7A7Q9UM01 511 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 ZFR2Q9UPR6 939 aaKnown RBP17.48■□□□□ 0.39
CPSF3-201ENST00000238112 C2orf92A0A1B0GVN3 265 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 SOCS6O14544 535 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 KAT7O95251 611 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 CEACAM5P06731 702 aa17.48■□□□□ 0.39
CPSF3-201ENST00000238112 ZNF24P17028 368 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms