RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ATXN7L1Q9ULK2 861 aaPredicted RBP12.82□□□□□ -0.36
SF3A1-201ENST00000215793 MC3RP41968 323 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 EEF1A1P5Q5VTE0 462 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 PXKQ7Z7A4 578 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 TRMT10AQ8TBZ6 339 aaKnown RBP12.82□□□□□ -0.36
SF3A1-201ENST00000215793 GPR148Q8TDV2 347 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 TMEM239Q8WW34 195 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 NEIL2Q969S2 332 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 DPH1Q9BZG8 443 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 LINC00597Q9H2U6 94 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 GORASP2Q9H8Y8 452 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 TREX1Q9NSU2 369 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 POU2F3Q9UKI9 436 aa12.82□□□□□ -0.36
SF3A1-201ENST00000215793 EEF1E1-BLOC1S5C9J1V9 151 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 AKR1C4P17516 323 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 TUBG1P23258 451 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 CERS1P27544 350 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 HOXC13P31276 330 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 LSSP48449 732 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 ZNF140P52738 457 aaPredicted RBP12.81□□□□□ -0.36
SF3A1-201ENST00000215793 AKR1C2P52895 323 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 TRA2BP62995 288 aaKnown RBP12.81□□□□□ -0.36
SF3A1-201ENST00000215793 AWAT2Q6E213 333 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 BORAQ6PGQ7 559 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 DCP2Q8IU60 420 aaKnown RBP12.81□□□□□ -0.36
SF3A1-201ENST00000215793 SPTSSAQ969W0 71 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 VRK1Q99986 396 aaPredicted RBP12.81□□□□□ -0.36
SF3A1-201ENST00000215793 DHRS4Q9BTZ2 278 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 APOOQ9BUR5 198 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 SLC7A7Q9UM01 511 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 CICQ96RK0 1608 aaPredicted RBP12.81□□□□□ -0.36
SF3A1-201ENST00000215793 NAP1L6A6NFF2 107 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 A8MVJ9 347 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 LYRM1O43325 122 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 LATO43561 262 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 MAGEA3P43357 314 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 FASLGP48023 281 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 FOXA1P55317 472 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 NTHL1P78549 312 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 ZXDBP98169 803 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 LIX1LQ8IVB5 337 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 ADGRG5Q8IZF4 528 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 OR6Q1Q8NGQ2 317 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 ZNF587Q96SQ5 575 aaPredicted RBP12.81□□□□□ -0.36
SF3A1-201ENST00000215793 SLC30A3Q99726 388 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 DPCDQ9BVM2 203 aaPredicted RBP12.81□□□□□ -0.36
SF3A1-201ENST00000215793 EVA1AQ9H8M9 152 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 HEBP1Q9NRV9 189 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 NCDNQ9UBB6 729 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 PRAMEF26H0Y7S4 382 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 SMAD6O43541 496 aaKnown RBP12.81□□□□□ -0.36
SF3A1-201ENST00000215793 FOXD2O60548 495 aaPredicted RBP12.81□□□□□ -0.36
SF3A1-201ENST00000215793 HMGN2P05204 90 aaKnown RBP12.81□□□□□ -0.36
SF3A1-201ENST00000215793 LCKP06239 509 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 FUT1P19526 365 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 NUDT1P36639 197 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 CSNK1DP48730 415 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 RPS26P11Q5JNZ5 115 aaPredicted RBP12.81□□□□□ -0.36
SF3A1-201ENST00000215793 CNOT9Q92600 299 aaKnown RBP12.81□□□□□ -0.36
SF3A1-201ENST00000215793 APMAPQ9HDC9 416 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 ACTR10Q9NZ32 417 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 IL20RAQ9UHF4 553 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 MYO9BQ13459 2157 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 KNDC1Q76NI1 1749 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 KIR2DS5A0A0G2JLQ3 304 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 A0A0G2JMP0 313 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 A0A0G2JNG1 304 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 LOC285095A0A1B0GVY8 99 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 KIR2DS3K7RE56 304 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 IRF2P14316 349 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 MELKQ14680 651 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 KIR2DS5Q14953 304 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 DEFB110Q30KQ9 67 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 HTR3DQ70Z44 454 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 SLC35F2Q8IXU6 374 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 ACOT4Q8N9L9 421 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 DNAAF1Q8NEP3 725 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 MDGA1Q8NFP4 955 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 OR4M2Q8NGB6 313 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 OR14L1PQ8NHC6 308 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 KLF16Q9BXK1 252 aaPredicted RBP12.81□□□□□ -0.36
SF3A1-201ENST00000215793 CUEDC1Q9NWM3 386 aaPredicted RBP12.81□□□□□ -0.36
SF3A1-201ENST00000215793 OR6C2Q9NZP2 312 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 CNIH4Q9P003 139 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 PHRF1Q9P1Y6 1649 aaKnown RBP12.81□□□□□ -0.36
SF3A1-201ENST00000215793 MYH11P35749 1972 aa12.81□□□□□ -0.36
SF3A1-201ENST00000215793 A0A0J9YY10 115 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 HMX3A6NHT5 357 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 APOC3P02656 99 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 MMP2P08253 660 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 RBMS1P29558 406 aaKnown RBP12.8□□□□□ -0.36
SF3A1-201ENST00000215793 PBX2P40425 430 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 MRPS10P82664 201 aaKnown RBP12.8□□□□□ -0.36
SF3A1-201ENST00000215793 PPA1Q15181 289 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 MORN1Q5T089 497 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 PRAMEF8Q5VWM4 474 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 PRAMEF7Q5VXH5 474 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 RTL10Q7L3V2 364 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 SLC39A11Q8N1S5 342 aa12.8□□□□□ -0.36
SF3A1-201ENST00000215793 SLC15A4Q8N697 577 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms