RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 FAM181AQ8N9Y4 354 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 OR11H4Q8NGC9 324 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 MS4A6EQ96DS6 147 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 SLC35A4Q96G79 324 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 COX14Q96I36 57 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 PAWRQ96IZ0 340 aaKnown RBP9.99□□□□□ -0.81
USP28-201ENST00000003302 METTL2AQ96IZ6 378 aaKnown RBP9.99□□□□□ -0.81
USP28-201ENST00000003302 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 TTC36A6NLP5 189 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 EIF4EP06730 217 aaKnown RBP9.99□□□□□ -0.81
USP28-201ENST00000003302 ADH1AP07327 375 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 SIM1P81133 766 aaPredicted RBP9.99□□□□□ -0.81
USP28-201ENST00000003302 OCLNQ16625 522 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 PLK5Q496M5 336 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 TRMT12Q53H54 448 aaKnown RBP9.99□□□□□ -0.81
USP28-201ENST00000003302 KIAA1211LQ6NV74 962 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 LCTLQ6UWM7 567 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 NOXA1Q86UR1 476 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 CDS1Q92903 461 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 GIMAP5Q96F15 307 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 WDFY2Q96P53 400 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 FERD3LQ96RJ6 166 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 ABHD1Q96SE0 405 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 RHBGQ9H310 441 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 CBLCQ9ULV8 474 aa9.99□□□□□ -0.81
USP28-201ENST00000003302 ZFR2Q9UPR6 939 aaKnown RBP9.99□□□□□ -0.81
USP28-201ENST00000003302 TRAV6A0A075B6T7 132 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 PSMD9O00233 223 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 BTN3A3O00478 584 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 MAKP20794 623 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 HTR2AP28223 471 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 CDH11P55287 796 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 ZNF33BQ06732 778 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 DEFB115Q30KQ5 88 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 ZNF311Q5JNZ3 666 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 PDZK1Q5T2W1 519 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 AADACL4Q5VUY2 407 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 DCUN1D3Q8IWE4 304 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 IZUMO1Q8IYV9 350 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 POGLUT1Q8NBL1 392 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 FBXO15Q8NCQ5 510 aaPredicted RBP9.98□□□□□ -0.81
USP28-201ENST00000003302 GRPEL2Q8TAA5 225 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 NEIL3Q8TAT5 605 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 NFKBIL1Q9UBC1 381 aaPredicted RBP9.98□□□□□ -0.81
USP28-201ENST00000003302 P2RX2Q9UBL9 471 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 SLC23A1Q9UHI7 598 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 ZMIZ1Q9ULJ6 1067 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 A0A1W2PP55 124 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 ANKRD61A6NGH8 418 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 GNB5O14775 395 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 PCDH8O95206 1070 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 ERGP11308 486 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 HTR2BP41595 481 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 RFX3P48380 749 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 SLC9A3P48764 834 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 TAS2R41P59536 307 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 SLAIN1Q8ND83 568 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 TMEM163Q8TC26 289 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 PATE1Q8WXA2 126 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 TMCO6Q96DC7 493 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 DKK3Q9UBP4 350 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 CES1P1Q9UKY3 287 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 TICRRQ7Z2Z1 1910 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 MUC22E2RYF6 1773 aaPredicted RBP9.98□□□□□ -0.81
USP28-201ENST00000003302 ARRDC5A6NEK1 342 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 ACP2P11117 423 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 BTCP35070 178 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 ASAH1Q13510 395 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 FAM78AQ5JUQ0 283 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 SLC27A4Q6P1M0 643 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 NUDT13Q86X67 352 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 FLCNQ8NFG4 579 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 OR5H6Q8NGV6 325 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 SNAPC3Q92966 411 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 PEX11GQ96HA9 241 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 KCTD7Q96MP8 289 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 SOSTQ9BQB4 213 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 DPEP2Q9H4A9 486 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 SURF4O15260 269 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 ACVR1BP36896 505 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 ABATP80404 500 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 REEP5Q00765 189 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 RUNX1T1Q06455 604 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 TIMM50Q3ZCQ8 353 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 PPP2R2DQ66LE6 453 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 TRILQ7L0X0 811 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 OR5T3Q8NGG3 340 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 ZCCHC10Q8TBK6 192 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 GAS2L1Q99501 681 aaPredicted RBP9.98□□□□□ -0.81
USP28-201ENST00000003302 GPR174Q9BXC1 333 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 C1QTNF6Q9BXI9 259 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 PRSS16Q9NQE7 514 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 USP36Q9P275 1121 aaKnown RBP9.98□□□□□ -0.81
USP28-201ENST00000003302 CRNNQ9UBG3 495 aaPredicted RBP9.98□□□□□ -0.81
USP28-201ENST00000003302 SLC7A7Q9UM01 511 aa9.98□□□□□ -0.81
USP28-201ENST00000003302 IDSB3KWA1 339 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 P2RX6O15547 441 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 LDB3O75112 727 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 TSC22D2O75157 780 aa9.97□□□□□ -0.81
USP28-201ENST00000003302 IFNA14P01570 189 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms