RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 MOCOSQ96EN8 888 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 SNX18Q96RF0 628 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ALG8Q9BVK2 526 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 SRMSQ9H3Y6 488 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 RPS10P5Q9NQ39 176 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 MYOCOSA0A1B0GUC4 107 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 IQCF5A8MTL0 148 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 SC5DO75845 299 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 EPHX1P07099 455 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 RPL29P47914 159 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 SEMA5AQ13591 1074 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 EXOC3L2Q2M3D2 409 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 CDKAL1Q5VV42 579 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 DUPD1Q68J44 220 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF555Q8NEP9 628 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 DCAKDQ8WVC6 231 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ASB10Q8WXI3 467 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 GPR62Q9BZJ7 368 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 FAM83DQ9H4H8 585 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 FN3KRPQ9HA64 309 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ERVK-5Q9HDB9 667 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 MYOZ2Q9NPC6 264 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ASF1AQ9Y294 204 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 NEU2Q9Y3R4 380 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 TAF1LQ8IZX4 1826 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 TBC1D3KA0A087X1G2 549 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF785A8K8V0 405 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 FGBP02675 491 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 GBAP04062 536 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 DUSP2Q05923 314 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 MAPK14Q16539 360 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 MARC1Q5VT66 337 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 JAGN1Q8N5M9 183 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 RSPO3Q9BXY4 272 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM134Q9H6X4 195 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 DNAJC5BQ9UF47 199 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM235A6NFC5 223 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 RHBDL1O75783 438 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 PAPLNO95428 1278 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 PTGER4P35408 488 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 GJA5P36382 358 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 SLC16A1P53985 500 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 HTR4Q13639 388 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ACSBG2Q5FVE4 666 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ZDHHC13Q8IUH4 622 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 OR10D4PQ8NGN7 298 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ADAMTS17Q8TE56 1095 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 FGGYQ96C11 551 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 MASTLQ96GX5 879 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 JPH1Q9HDC5 661 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 TLR9Q9NR96 1032 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ONECUT1Q9UBC0 465 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 DUSP10Q9Y6W6 482 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 CCDC187A0A096LP49 1063 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF729A6NN14 1252 aaPredicted RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 NPY1RP25929 384 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 MMP15P51511 669 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 NCS1P62166 190 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 CPEB2Q7Z5Q1 589 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 C1orf87Q8N0U7 546 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 MTURNQ8N3F0 131 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ADAMTS18Q8TE60 1221 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 LRRC15Q8TF66 581 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ACDQ96AP0 544 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 PARPBPQ9NWS1 579 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF226Q9NYT6 803 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 RAP2CQ9Y3L5 183 aa3.38□□□□□ -1.87
SCN1A-221ENST00000641996 TBL2Q9Y4P3 447 aaKnown RBP3.38□□□□□ -1.87
SCN1A-221ENST00000641996 DNAJC25-GNG10A0A024R161 153 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 MAGEB17A8MXT2 336 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF587BE7ETH6 402 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SAP18O00422 153 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SIGLEC5O15389 551 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 FABP3P05413 133 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 LIPCP11150 499 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ADRA2CP18825 462 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 EPHA1P21709 976 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 GRM5P41594 1212 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SULT1A2P50226 295 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ACSM1Q08AH1 577 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 FABP9Q0Z7S8 132 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 UBXN2BQ14CS0 331 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 CPNE9Q8IYJ1 553 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 OR52N2Q8NGI0 321 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ASB9Q96DX5 294 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 OR2M2Q96R28 347 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 THSD1Q9NS62 852 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 PLCXD1Q9NUJ7 323 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF358Q9NW07 568 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF541Q9H0D2 1346 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 HMGB3O15347 200 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 MSI1O43347 362 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 FKBP6O75344 327 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 GUSBP08236 651 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 CD80P33681 288 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 RAB1AP62820 205 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 RHEBQ15382 184 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 GCNT6Q5T4J0 391 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 FRRS1Q6ZNA5 592 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms