RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ACSM5Q6NUN0 579 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 GPRIN3Q6ZVF9 776 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 PPP1R3BQ86XI6 285 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 DENND1CQ8IV53 801 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF596Q8TC21 504 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 RNF128Q8TEB7 428 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ZCCHC14Q8WYQ9 949 aaKnown RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 PEX11GQ96HA9 241 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 SEC61A2Q9H9S3 476 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ENAMQ9NRM1 1142 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 MIOSQ9NXC5 875 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 ZDHHC7Q9NXF8 308 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 VSX1Q9NZR4 365 aaPredicted RBP2.65□□□□□ -1.98
SCN1A-219ENST00000641575 SCP2D1Q9UJQ7 156 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 LAMP3Q9UQV4 416 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 POLHQ9Y253 713 aa2.65□□□□□ -1.98
SCN1A-219ENST00000641575 GPR171O14626 319 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TPP1O14773 563 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PRKACGP22612 351 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ICAM3P32942 547 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ATXN7L3Q14CW9 347 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TRNP1Q6NT89 227 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 KCTD9Q7L273 389 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 SLC41A1Q8IVJ1 513 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 FAM3CQ92520 227 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TLCD1Q96CP7 247 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF670Q9BS34 389 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TTYH2Q9BSA4 534 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CHST8Q9H2A9 424 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 NIPAL2Q9H841 368 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MRPS16Q9Y3D3 137 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 AMMECR1Q9Y4X0 333 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ABCC3O15438 1527 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ADAP1O75689 374 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 DIRAS1O95057 198 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 GYPCP04921 128 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PNMTP11086 282 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 SRMP19623 302 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CAPN3P20807 821 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CD9P21926 228 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 YBEYP58557 167 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PSMA6P60900 246 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 BAATQ14032 418 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 GANABQ14697 944 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 SNRNP35Q16560 246 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CYB5R4Q7L1T6 521 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 SH3RF1Q7Z6J0 888 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 SIAH1Q8IUQ4 282 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 LYSMD2Q8IV50 215 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 KLHL36Q8N4N3 616 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 KREMEN2Q8NCW0 462 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 OR5R1Q8NH85 324 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM171Q8WVE6 324 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 LPGAT1Q92604 370 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 NINJ2Q9NZG7 142 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ASH2LQ9UBL3 628 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 APOBEC3BQ9UH17 382 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ZDHHC9Q9Y397 364 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ASTN1O14525 1302 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 BEST1O76090 585 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 GOT2P00505 430 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MT-ND1P03886 318 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ATP1B2P14415 290 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PRDX5P30044 214 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 RANP62826 216 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 RSU1Q15404 277 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TRIM61Q5EBN2 209 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 XKR6Q5GH73 641 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 RTP2Q5QGT7 225 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ANKRD22Q5VYY1 191 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 LPCAT4Q643R3 524 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ACSM6Q6P461 480 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 EXD3Q8N9H8 876 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 SUMF2Q8NBJ7 301 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ASB5Q8WWX0 329 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 UTP4Q969X6 686 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM176AQ96HP8 235 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 FAXDC2Q96IV6 333 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MRGPRX2Q96LB1 330 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CAMK1GQ96NX5 476 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF559Q9BR84 538 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ARL6Q9H0F7 186 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 XPNPEP1Q9NQW7 623 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 MKS1Q9NXB0 559 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 KLHL9Q9P2J3 617 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PITPNC1Q9UKF7 332 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ENTPD2Q9Y5L3 495 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PLXNB3Q9ULL4 1909 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 DOCK1Q14185 1865 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CLTCQ00610 1675 aaKnown RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 GXYLT2A0PJZ3 443 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 ICMTO60725 284 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 TBL1XO60907 577 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 RFPL1O75677 317 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 RETP07949 1114 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 BCKDHAP12694 445 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CD36P16671 472 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 CD72P21854 359 aa2.65□□□□□ -1.99
SCN1A-219ENST00000641575 HOXA13P31271 388 aaPredicted RBP2.65□□□□□ -1.99
SCN1A-219ENST00000641575 PCBP4P57723 403 aaKnown RBP2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms