RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 HTR5AP47898 357 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 CDX1P47902 265 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 SRP9P49458 86 aaKnown RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 LUMP51884 338 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 WNT7BP56706 349 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF616Q08AN1 781 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ST3GAL2Q16842 350 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 C9orf64Q5T6V5 341 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 KDM4DQ6B0I6 523 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 TANGO2Q6ICL3 276 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 GAREM2Q75VX8 874 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 BEST3Q8N1M1 668 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 MFSD9Q8NBP5 474 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 NUDT10Q8NFP7 164 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 DBF4BQ8NFT6 615 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 OR10Q1Q8NGQ4 319 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 OR52P1PQ8NH57 321 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 UBE2FQ969M7 185 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 CHFRQ96EP1 664 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 IL4I1Q96RQ9 567 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 PHB2Q99623 299 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 FSD1LQ9BXM9 530 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ING1Q9UK53 422 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 COQ4Q9Y3A0 265 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 TMEM184BQ9Y519 407 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 PCDHGC4Q9Y5F7 938 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 PCDHGA5Q9Y5G8 931 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 PLIN4Q96Q06 1357 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 A0A0U1RQS6 177 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 HMSDA8MTL9 139 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 TISP43B9A030 160 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 E7EQ34 232 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 FXYD1O00168 92 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 UPK1AO00322 258 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 GOSR2O14653 212 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 YIF1AO95070 293 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 HIST1H2ABP04908 130 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 THP07101 528 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 KIR3DL2P43630 455 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 GPR15P49685 360 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 DAOAP59103 153 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 NFKB2Q00653 900 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 SLC25A11Q02978 314 aaKnown RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 SLC10A7Q0GE19 358 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 RCAN2Q14206 197 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF460Q14592 562 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 GINS1Q14691 196 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 DEFB115Q30KQ5 88 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 PYCR3Q53H96 274 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 FIGNL1Q6PIW4 674 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 DPPA4Q7L190 304 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 HIST3H2AQ7L7L0 130 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 CLEC14AQ86T13 490 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ADIPOR2Q86V24 386 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 FAM181AQ8N9Y4 354 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 JOSD2Q8TAC2 188 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 BRI3BPQ8WY22 251 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 HIST1H2ACQ93077 130 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 HLA-CQ95604 372 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 OR52E6Q96RD3 313 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 RTP3Q9BQQ7 232 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 SULT4A1Q9BR01 284 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF670Q9BS34 389 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 MAGEB5Q9BZ81 275 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 OR2AG1Q9H205 316 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 UBQLN3Q9H347 655 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 DCAF13Q9NV06 445 aaKnown RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 AIG1Q9NVV5 245 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 PLEKHM1Q9Y4G2 1056 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 MEGF6O75095 1541 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 C9orf170A2RU37 121 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 KDM4EB2RXH2 506 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 TLR4O00206 839 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 OR10H3O60404 316 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ESR1P03372 595 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 MT-ND4P03905 459 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 TPT1P13693 172 aaKnown RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 FABP4P15090 132 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 CD96P40200 585 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 BDKRB1P46663 353 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 TTPAP49638 278 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 TAF13Q15543 124 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ATAT1Q5SQI0 421 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 LRIF1Q5T3J3 769 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 NSUN5P2Q63ZY6 315 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 C18orf63Q68DL7 685 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 C8orf82Q6P1X6 216 aaPredicted RBP5.43□□□□□ -1.54
SCN1A-216ENST00000637968 VHLLQ6RSH7 139 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 MBOAT1Q6ZNC8 495 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 HIST2H3AQ71DI3 136 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 LRRTM1Q86UE6 522 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 PPP1R3BQ86XI6 285 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 DCBLD1Q8N8Z6 715 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 PLA2G15Q8NCC3 412 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 FIBINQ8TAL6 211 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 ZCCHC10Q8TBK6 192 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 RNF141Q8WVD5 230 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 CDCA4Q9BXL8 241 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 COMMD4Q9H0A8 199 aa5.43□□□□□ -1.54
SCN1A-216ENST00000637968 C20orf85Q9H1P6 137 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 229.7 ms