RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 EXOC3L2Q2M3D2 409 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 OR2M3Q8NG83 312 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 RNF138Q8WVD3 245 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 EXOSC8Q96B26 276 aaKnown RBP17.47■□□□□ 0.39
CLN3-262ENST00000637699 RNF122Q9H9V4 155 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 BRF2Q9HAW0 419 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 NMRK1Q9NWW6 199 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 MED11Q9P086 117 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 XPR1Q9UBH6 696 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 TMCO1Q9UM00 188 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 SNX6Q9UNH7 406 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 PROCRQ9UNN8 238 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 OR10H1Q9Y4A9 318 aa17.47■□□□□ 0.39
CLN3-262ENST00000637699 RAI1Q7Z5J4 1906 aaPredicted RBP17.47■□□□□ 0.39
CLN3-262ENST00000637699 H3BML4 177 aa17.46■□□□□ 0.39
CLN3-262ENST00000637699 OTCP00480 354 aa17.46■□□□□ 0.39
CLN3-262ENST00000637699 IL3P08700 152 aa17.46■□□□□ 0.39
CLN3-262ENST00000637699 CTAGE8P0CG41 777 aa17.46■□□□□ 0.39
CLN3-262ENST00000637699 CLDN20P56880 219 aa17.46■□□□□ 0.39
CLN3-262ENST00000637699 STX5Q13190 355 aa17.46■□□□□ 0.39
CLN3-262ENST00000637699 PON3Q15166 354 aa17.46■□□□□ 0.39
CLN3-262ENST00000637699 CTAGE4Q8IX94 777 aa17.46■□□□□ 0.39
CLN3-262ENST00000637699 FADS6Q8N9I5 356 aa17.46■□□□□ 0.39
CLN3-262ENST00000637699 ERP27Q96DN0 273 aa17.46■□□□□ 0.39
CLN3-262ENST00000637699 C16orf45Q96MC5 204 aaPredicted RBP17.46■□□□□ 0.39
CLN3-262ENST00000637699 RAB17Q9H0T7 212 aa17.46■□□□□ 0.39
CLN3-262ENST00000637699 VPS29Q9UBQ0 182 aa17.46■□□□□ 0.39
CLN3-262ENST00000637699 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.45■□□□□ 0.38
CLN3-262ENST00000637699 THBDP07204 575 aa17.45■□□□□ 0.38
CLN3-262ENST00000637699 NID1P14543 1247 aa17.45■□□□□ 0.38
CLN3-262ENST00000637699 EVI2BP34910 448 aa17.45■□□□□ 0.38
CLN3-262ENST00000637699 MRPS22P82650 360 aaKnown RBP17.45■□□□□ 0.38
CLN3-262ENST00000637699 SLC7A5Q01650 507 aa17.45■□□□□ 0.38
CLN3-262ENST00000637699 FGFBP1Q14512 234 aa17.45■□□□□ 0.38
CLN3-262ENST00000637699 TCHHL1Q5QJ38 904 aaPredicted RBP17.45■□□□□ 0.38
CLN3-262ENST00000637699 SH2D4BQ5SQS7 431 aa17.45■□□□□ 0.38
CLN3-262ENST00000637699 TMEM171Q8WVE6 324 aa17.45■□□□□ 0.38
CLN3-262ENST00000637699 MTBPQ96DY7 904 aa17.45■□□□□ 0.38
CLN3-262ENST00000637699 SENP1Q9P0U3 644 aa17.45■□□□□ 0.38
CLN3-262ENST00000637699 ZNF175Q9Y473 711 aa17.45■□□□□ 0.38
CLN3-262ENST00000637699 STAB1Q9NY15 2570 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 PCNX3Q9H6A9 2034 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 OR2M5A3KFT3 312 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 OR4F21O95013 312 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 RPS17P08708 135 aaKnown RBP17.44■□□□□ 0.38
CLN3-262ENST00000637699 CHN1P15882 459 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 NR1H2P55055 460 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 PSPHP78330 225 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 BEX5Q5H9J7 111 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 PPP4R4Q6NUP7 873 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 ZNF704Q6ZNC4 412 aaPredicted RBP17.44■□□□□ 0.38
CLN3-262ENST00000637699 FAM214BQ7L5A3 538 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 OR7G2Q8NG99 324 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 UHMK1Q8TAS1 419 aaKnown RBP17.44■□□□□ 0.38
CLN3-262ENST00000637699 ZNF483Q8TF39 744 aaPredicted RBP17.44■□□□□ 0.38
CLN3-262ENST00000637699 IGFBPL1Q8WX77 278 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 CAVIN3Q969G5 261 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 TAS2R9Q9NYW1 312 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 FLRT3Q9NZU0 649 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 MCM8Q9UJA3 840 aa17.44■□□□□ 0.38
CLN3-262ENST00000637699 SONP18583 2426 aaKnown RBP17.44■□□□□ 0.38
CLN3-262ENST00000637699 UQCRHLA0A096LP55 91 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 GNG14A0A1W2PPG7 69 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 ESYT3A0FGR9 886 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 KLF4O43474 513 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 FADS1O60427 444 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 PLOD3O60568 738 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 AQP8O94778 261 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 PLAUP00749 431 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 RPS3AP61247 264 aaKnown RBP17.43■□□□□ 0.38
CLN3-262ENST00000637699 ZNF155Q12901 538 aaPredicted RBP17.43■□□□□ 0.38
CLN3-262ENST00000637699 GUSBP1Q15486 140 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 SGCBQ16585 318 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 UBAP2Q5T6F2 1119 aaKnown RBP17.43■□□□□ 0.38
CLN3-262ENST00000637699 SAMD14Q8IZD0 417 aaPredicted RBP17.43■□□□□ 0.38
CLN3-262ENST00000637699 DUSP19Q8WTR2 217 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 RTN4RQ9BZR6 473 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 STMN4Q9H169 189 aaPredicted RBP17.43■□□□□ 0.38
CLN3-262ENST00000637699 CXorf56Q9H5V9 222 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 PTGES2Q9H7Z7 377 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 SLC35C2Q9NQQ7 365 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 SDHAF3Q9NRP4 125 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 GIMAP4Q9NUV9 329 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 ZNF225Q9UK10 706 aa17.43■□□□□ 0.38
CLN3-262ENST00000637699 LINC01387J3KSC0 135 aa17.42■□□□□ 0.38
CLN3-262ENST00000637699 MANBAO00462 879 aa17.42■□□□□ 0.38
CLN3-262ENST00000637699 GMFGO60234 142 aa17.42■□□□□ 0.38
CLN3-262ENST00000637699 PCDH7O60245 1069 aa17.42■□□□□ 0.38
CLN3-262ENST00000637699 CRLF1O75462 422 aa17.42■□□□□ 0.38
CLN3-262ENST00000637699 URI1O94763 535 aaPredicted RBP17.42■□□□□ 0.38
CLN3-262ENST00000637699 ATP5J2P56134 94 aa17.42■□□□□ 0.38
CLN3-262ENST00000637699 RAE1P78406 368 aaKnown RBP17.42■□□□□ 0.38
CLN3-262ENST00000637699 PSG6Q00889 435 aa17.42■□□□□ 0.38
CLN3-262ENST00000637699 TNK1Q13470 666 aa17.42■□□□□ 0.38
CLN3-262ENST00000637699 GANABQ14697 944 aaKnown RBP17.42■□□□□ 0.38
CLN3-262ENST00000637699 TSNAXIP1Q2TAA8 658 aa17.42■□□□□ 0.38
CLN3-262ENST00000637699 SH2D5Q6ZV89 423 aa17.42■□□□□ 0.38
CLN3-262ENST00000637699 FAM9CQ8IZT9 166 aa17.42■□□□□ 0.38
CLN3-262ENST00000637699 CDYL2Q8N8U2 506 aa17.42■□□□□ 0.38
CLN3-262ENST00000637699 PRRG4Q9BZD6 226 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms