RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 MAPK14Q16539 360 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 FAHD1Q6P587 224 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 ZNF836Q6ZNA1 936 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 ZAR1Q86SH2 424 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 CLIP4Q8N3C7 705 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 PLPP5Q8NEB5 264 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 OR7G1Q8NGA0 311 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 OR6T1Q8NGN1 323 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 GIPC3Q8TF64 312 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 ITPAQ9BY32 194 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 PRODH2Q9UF12 536 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 SLC13A4Q9UKG4 626 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 ACAD8Q9UKU7 415 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 PCDHGA8Q9Y5G5 932 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 CLCA3PQ9Y6N3 262 aa15.65■□□□□ 0.1
CLN3-252ENST00000636907 CLDN24A6NM45 220 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 H0YAE9 185 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 PEX12O00623 359 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 PCDH17O14917 1159 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 POLR1CO15160 346 aaPredicted RBP15.64■□□□□ 0.09
CLN3-252ENST00000636907 FRS3O43559 492 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 BRINP1O60477 761 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 ONECUT2O95948 504 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 ZGLP1P0C6A0 271 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 CT45A8P0DMV1 189 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 CT45A9P0DMV2 189 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 RPS4Y1P22090 263 aaKnown RBP15.64■□□□□ 0.09
CLN3-252ENST00000636907 MYF6P23409 242 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 IGFBP5P24593 272 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 TRHRP34981 398 aaPredicted RBP15.64■□□□□ 0.09
CLN3-252ENST00000636907 RAD23AP54725 363 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 OCA2Q04671 838 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 CT45A2Q5DJT8 189 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 ISLR2Q6UXK2 745 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 RBM44Q6ZP01 1051 aaKnown RBP15.64■□□□□ 0.09
CLN3-252ENST00000636907 ATG16L2Q8NAA4 619 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 C7orf57Q8NEG2 295 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 OR10G2Q8NGC3 310 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 SLC2A12Q8TD20 617 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 OR8D2Q9GZM6 311 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 NMNAT1Q9HAN9 279 aaPredicted RBP15.64■□□□□ 0.09
CLN3-252ENST00000636907 CACYBPQ9HB71 228 aaKnown RBP15.64■□□□□ 0.09
CLN3-252ENST00000636907 TMEM9BQ9NQ34 198 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 KCNE5Q9UJ90 142 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 C3orf18Q9UK00 162 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 A4GNTQ9UNA3 340 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 ORC6Q9Y5N6 252 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 WDR87Q6ZQQ6 2873 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 NINQ8N4C6 2090 aa15.64■□□□□ 0.09
CLN3-252ENST00000636907 DYRK3O43781 588 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 CBFA2T3O75081 653 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 DDAH2O95865 285 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 IGKV1D-16P01601 117 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 THBS1P07996 1170 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 IL7RP16871 459 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 PIGAP37287 484 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 RFX3P48380 749 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 SLC37A1P57057 533 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 MYBPC1Q00872 1141 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 IL1RL1Q01638 556 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 MC2RQ01718 297 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 EPS8Q12929 822 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 FOXD4Q12950 439 aaPredicted RBP15.63■□□□□ 0.09
CLN3-252ENST00000636907 KCNAB2Q13303 367 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 PIN1Q13526 163 aaPredicted RBP15.63■□□□□ 0.09
CLN3-252ENST00000636907 LARS2Q15031 903 aaKnown RBP15.63■□□□□ 0.09
CLN3-252ENST00000636907 NNATQ16517 81 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 MICAQ29983 383 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 RFX4Q33E94 735 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 COLEC12Q5KU26 742 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 LCN10Q6JVE6 187 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 LANCL3Q6ZV70 420 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 USP51Q70EK9 711 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 GALNT5Q7Z7M9 940 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 TSPYL5Q86VY4 417 aaPredicted RBP15.63■□□□□ 0.09
CLN3-252ENST00000636907 ZNF721Q8TF20 911 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 PHF10Q8WUB8 498 aaKnown RBP15.63■□□□□ 0.09
CLN3-252ENST00000636907 DHRS1Q96LJ7 313 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 Q9N2J8 555 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 POLE3Q9NRF9 147 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 RLIMQ9NVW2 624 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 FAM118AQ9NWS6 357 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 KIF17Q9P2E2 1029 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 ZNF232Q9UNY5 417 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 TRBV4-1A0A0J9YWV2 114 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 CPNE3O75131 537 aaKnown RBP15.63■□□□□ 0.09
CLN3-252ENST00000636907 UGT2B17O75795 530 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 IGKV3-11P04433 115 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 DBIP07108 87 aaKnown RBP15.63■□□□□ 0.09
CLN3-252ENST00000636907 H1F0P07305 194 aaKnown RBP15.63■□□□□ 0.09
CLN3-252ENST00000636907 ZNF28P17035 718 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 CCKBRP32239 447 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 EEF1A1P68104 462 aaKnown RBP15.63■□□□□ 0.09
CLN3-252ENST00000636907 CCDC157Q569K6 752 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 AP1ARQ63HQ0 302 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 FAAH2Q6GMR7 532 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 KRT80Q6KB66 452 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 OVCH1Q7RTY7 1134 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 OFCC1Q8IZS5 231 aa15.63■□□□□ 0.09
CLN3-252ENST00000636907 SLC5A8Q8N695 610 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms