RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 PDZD3Q86UT5 571 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 ELMOD2Q8IZ81 293 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 VWA5B2Q8N398 1253 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 CPXM2Q8N436 756 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 CDRT4Q8N9R6 151 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 MS4A4EQ96PG1 132 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 WDR77Q9BQA1 342 aaPredicted RBP13.24□□□□□ -0.29
CPSF1-212ENST00000616140 MMP28Q9H239 520 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 SYT4Q9H2B2 425 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 USP36Q9P275 1121 aaKnown RBP13.24□□□□□ -0.29
CPSF1-212ENST00000616140 SLC7A7Q9UM01 511 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 PADI2Q9Y2J8 665 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 FAM186AA6NE01 2351 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 NDUFB2O95178 105 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 TIMP2P16035 220 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 PGCP20142 388 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 CASRP41180 1078 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 HHEXQ03014 270 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 LEXMQ3ZCV2 418 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 C6orf132Q5T0Z8 1188 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 LEG1Q6P5S2 330 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 LCTLQ6UWM7 567 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 OR2T11Q8NH01 316 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 ASB12Q8WXK4 309 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 TCEAL4Q96EI5 215 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 PELOQ9BRX2 385 aaKnown RBP13.24□□□□□ -0.29
CPSF1-212ENST00000616140 DEFB126Q9BYW3 111 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 OR10A4Q9H209 315 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 ASB6Q9NWX5 421 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 TAS2R3Q9NYW6 316 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 UBQLN2Q9UHD9 624 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 TEX13CA0A0J9YWL9 993 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 M0R036 132 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 NR4A2P43354 598 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 ART1P52961 327 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 RFLNAQ6ZTI6 216 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 ZNF565Q8N9K5 539 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 TMIEQ8NEW7 156 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 ADAMTS19Q8TE59 1207 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 PNPLA2Q96AD5 504 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 ZNF559Q9BR84 538 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 FKBP14Q9NWM8 211 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 CRYBG1Q9Y4K1 1723 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 FAM183AA6NL82 134 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 ITGB7P26010 798 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 DPP6P42658 865 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 DEFB103AP81534 67 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 GALK2Q01415 458 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 TBCEQ15813 527 aaPredicted RBP13.23□□□□□ -0.29
CPSF1-212ENST00000616140 SLC14A2Q15849 920 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 SYPL1Q16563 259 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 CDNFQ49AH0 187 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 NKAPLQ5M9Q1 402 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 WDR53Q7Z5U6 358 aaPredicted RBP13.23□□□□□ -0.29
CPSF1-212ENST00000616140 RBM12BQ8IXT5 1001 aaKnown RBP13.23□□□□□ -0.29
CPSF1-212ENST00000616140 GALNT11Q8NCW6 608 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 TRMT10AQ8TBZ6 339 aaKnown RBP13.23□□□□□ -0.29
CPSF1-212ENST00000616140 HYLS1Q96M11 299 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 SLC22A12Q96S37 553 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 CPPED1Q9BRF8 314 aaPredicted RBP13.23□□□□□ -0.29
CPSF1-212ENST00000616140 KIAA0355O15063 1070 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 FBXO45P0C2W1 286 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 HTR2BP41595 481 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 GIPRP48546 466 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 CLRN1P58418 232 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 HERV-K104P61576 105 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 NHSL2Q5HYW2 709 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 HES5Q5TA89 166 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 ZC3H14Q6PJT7 736 aaKnown RBP13.23□□□□□ -0.29
CPSF1-212ENST00000616140 DPPA4Q7L190 304 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 LKAAEAR1Q8TD35 194 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 SAP130Q9H0E3 1048 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 TMEM185BQ9H7F4 350 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 ZNF701Q9NV72 531 aaPredicted RBP13.23□□□□□ -0.29
CPSF1-212ENST00000616140 SFTPBP07988 381 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 GKN3PP0CG01 181 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 ITGAMP11215 1152 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 CFL1P23528 166 aaKnown RBP13.23□□□□□ -0.29
CPSF1-212ENST00000616140 RIDAP52758 137 aaKnown RBP13.23□□□□□ -0.29
CPSF1-212ENST00000616140 AIMP2Q13155 320 aaKnown RBP13.23□□□□□ -0.29
CPSF1-212ENST00000616140 NSDHLQ15738 373 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 RNASE10Q5GAN6 216 aaKnown RBP13.23□□□□□ -0.29
CPSF1-212ENST00000616140 NPIPA5A0A0B4J1W7 369 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 NPIPA7E9PJI5 369 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 OR7A17O14581 309 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 CASC3O15234 703 aaKnown RBP13.23□□□□□ -0.29
CPSF1-212ENST00000616140 ADAMTS4O75173 837 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 APBB3O95704 486 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 NPIPA8P0DM63 369 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 UGT2B10P36537 528 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 TP53I3Q53FA7 332 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 PYHIN1Q6K0P9 492 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 SBSNQ6UWP8 590 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 TMEM239Q8WW34 195 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 SGCDQ92629 289 aa13.23□□□□□ -0.29
CPSF1-212ENST00000616140 CPNE2Q96FN4 548 aaPredicted RBP13.23□□□□□ -0.29
CPSF1-212ENST00000616140 POLR1CO15160 346 aaPredicted RBP13.22□□□□□ -0.29
CPSF1-212ENST00000616140 C1orf105O95561 183 aa13.22□□□□□ -0.29
CPSF1-212ENST00000616140 ENDOUP21128 410 aaKnown RBP13.22□□□□□ -0.29
CPSF1-212ENST00000616140 PSMB5P28074 263 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms