RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 GTF2H4Q92759 462 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 CDS1Q92903 461 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 NEURL3Q96EH8 262 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 SLC35G5Q96KT7 338 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 OR7D2Q96RA2 312 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 DOHHQ9BU89 302 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 TTTY12Q9BZ98 90 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 METTL7AQ9H8H3 244 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 SLC6A13Q9NSD5 602 aa15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.17■□□□□ 0.02
CCDC28A-202ENST00000611852 ICOSLGO75144 302 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 TRIM3O75382 744 aaPredicted RBP15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 GLSO94925 669 aaPredicted RBP15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 KCNK2O95069 426 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 SNX4O95219 450 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 C1QCP02747 245 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 MATN1P21941 496 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 PTPN6P29350 595 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 CHI3L1P36222 383 aaPredicted RBP15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 PTGDSP41222 190 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 SNTA1Q13424 505 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 FIGNL1Q6PIW4 674 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 SLC2A7Q6PXP3 512 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 DNAJC14Q6Y2X3 702 aaPredicted RBP15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 SIAH3Q8IW03 269 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 GALNT11Q8NCW6 608 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 MIPOL1Q8TD10 442 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 RNF138Q8WVD3 245 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 BTBD2Q9BX70 525 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 TSPAN10Q9H1Z9 355 aaPredicted RBP15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 IL1RL2Q9HB29 575 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 KCNE3Q9Y6H6 103 aa15.16■□□□□ 0.02
CCDC28A-202ENST00000611852 GMNCA6NCL1 334 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 PRAMEF25A6NGN4 478 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 LRRC3CA6NJW4 275 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 PYCARD-AS1I3L0S3 204 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 ZCCHC18P0CG32 403 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 TRPC1P48995 793 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 CASP9P55211 416 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 POU6F2P78424 691 aaPredicted RBP15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 PLGLB1Q02325 96 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 HYAL4Q2M3T9 481 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 C6orf10Q5SRN2 563 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 SLC30A6Q6NXT4 461 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 GALNT10Q86SR1 603 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 PHF12Q96QT6 1004 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 OSBPL11Q9BXB4 747 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 OR51I1Q9H343 314 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 GALNT9Q9HCQ5 603 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 ZFP64Q9NPA5 681 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 FBXO34Q9NWN3 711 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 KLRF1Q9NZS2 232 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 FLRT3Q9NZU0 649 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 BOKQ9UMX3 212 aaPredicted RBP15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 PCDHGB3Q9Y5G1 929 aa15.15■□□□□ 0.02
CCDC28A-202ENST00000611852 A0A1W2PP18 115 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 DUXAA6NLW8 204 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 FAM166BA8MTA8 275 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 NPIPA5E9PKD4 350 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 J3QKU1 62 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 TFECO14948 347 aaPredicted RBP15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 HS6ST1O60243 411 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 CBX6O95503 412 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 ANP32DO95626 131 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 EDN3P14138 238 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 DRD4P21917 467 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 PPIAP62937 165 aaKnown RBP15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 GTDC1Q4AE62 458 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 PAGE3Q5JUK9 113 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 CCNJQ5T5M9 372 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 FNDC7Q5VTL7 733 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 SPATA21Q7Z572 469 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 PACS2Q86VP3 889 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 ATCAYQ86WG3 371 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 RNF130Q86XS8 419 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 ST6GALNAC3Q8NDV1 305 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 ZFP90Q8TF47 636 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 TMEM41AQ96HV5 264 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 JSRP1Q96MG2 331 aaPredicted RBP15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 ELAC2Q9BQ52 826 aaKnown RBP15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 PAIP1Q9H074 479 aaKnown RBP15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 FAM107BQ9H098 131 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 SAR1AQ9NR31 198 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 MRGBPQ9NV56 204 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 NPIPA1Q9UND3 350 aa15.14■□□□□ 0.01
CCDC28A-202ENST00000611852 ACOT7O00154 380 aa15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 FADS1O60427 444 aa15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 EVI2BP34910 448 aa15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 UBAP2LQ14157 1087 aaKnown RBP15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 KRTCAP3Q53RY4 240 aa15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 DCST2Q5T1A1 773 aa15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 TNFAIP8L2Q6P589 184 aaPredicted RBP15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 ANGPTL8Q6UXH0 198 aa15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 ZAR1Q86SH2 424 aa15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 SLC22A16Q86VW1 577 aa15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 TMEM251Q8N6I4 163 aa15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 OR52N2Q8NGI0 321 aa15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 TSPEARQ8WU66 669 aa15.13■□□□□ 0.01
CCDC28A-202ENST00000611852 ZNF597Q96LX8 424 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms