RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ABOP16442 354 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 GDF1P27539 372 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 ZFP36L2P47974 494 aaKnown RBP13.9□□□□□ -0.18
LIG1-219ENST00000600055 TRPC1P48995 793 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 RPS26P62854 115 aaKnown RBP13.9□□□□□ -0.18
LIG1-219ENST00000600055 SNTA1Q13424 505 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 GSTA3Q16772 222 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 DPY19L1Q2PZI1 675 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 VPS26BQ4G0F5 336 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 CCNJQ5T5M9 372 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 ANXA8L1Q5VT79 327 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 TIGD3Q6B0B8 471 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 ZCCHC12Q6PEW1 402 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 FIGNL1Q6PIW4 674 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 PAOXQ6QHF9 649 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 Q6ZPB1 254 aaPredicted RBP13.9□□□□□ -0.18
LIG1-219ENST00000600055 TRILQ7L0X0 811 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 ZAR1Q86SH2 424 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 WDSUB1Q8N9V3 476 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 OR9I1Q8NGQ6 314 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 RNF138Q8WVD3 245 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 CDS1Q92903 461 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 ZBTB18Q99592 522 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 SLC6A15Q9H2J7 730 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 SDR39U1Q9NRG7 319 aaPredicted RBP13.9□□□□□ -0.18
LIG1-219ENST00000600055 FBXO34Q9NWN3 711 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 TNFRSF10DQ9UBN6 386 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 PCDHGB4Q9UN71 923 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 SVILO95425 2214 aa13.9□□□□□ -0.18
LIG1-219ENST00000600055 EXPH5Q8NEV8 1989 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 RNF103-CHMP3A0A140T963 221 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 ADAM10O14672 748 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 SNPHO15079 494 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 POLR3GO15318 223 aaPredicted RBP13.89□□□□□ -0.19
LIG1-219ENST00000600055 SCO2O43819 266 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 FADS1O60427 444 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 EDF1O60869 148 aaKnown RBP13.89□□□□□ -0.19
LIG1-219ENST00000600055 TRAPPC6AO75865 159 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 KCNK2O95069 426 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 KCNH1O95259 989 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 UTS2O95399 124 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 C1QCP02747 245 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 PGRP06401 933 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 PTPN6P29350 595 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 EVI2BP34910 448 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 PTGS2P35354 604 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 CA7P43166 264 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 MAN2A2P49641 1150 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 GAS1P54826 345 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 CASP9P55211 416 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 OR5M10Q6IEU7 315 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 CDC73Q6P1J9 531 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 ARHGAP11AQ6P4F7 1023 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 C3P1Q6ZMU1 363 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 C6orf120Q7Z4R8 191 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 COX18Q8N8Q8 333 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 VPS37AQ8NEZ2 397 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 OR1J4Q8NGS1 313 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 RFWD2Q8NHY2 731 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 FAM110BQ8TC76 370 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 RELTQ969Z4 430 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 OR52E6Q96RD3 313 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 INPP5KQ9BT40 448 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 CCDC28BQ9BUN5 200 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 ACTRT3Q9BYD9 372 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 RTN4RQ9BZR6 473 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 UBQLN3Q9H347 655 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 SERHL2Q9H4I8 314 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 LDAHQ9H6V9 325 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 SERHLQ9NQF3 203 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 FAM120CQ9NX05 1096 aaKnown RBP13.89□□□□□ -0.19
LIG1-219ENST00000600055 ZIM2Q9NZV7 527 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 B4GALT7Q9UBV7 327 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 BTNL2Q9UIR0 455 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 MRTO4Q9UKD2 239 aaKnown RBP13.89□□□□□ -0.19
LIG1-219ENST00000600055 FAF1Q9UNN5 650 aaPredicted RBP13.89□□□□□ -0.19
LIG1-219ENST00000600055 C15orf41Q9Y2V0 281 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 WIF1Q9Y5W5 379 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 BAHCC1Q9P281 2608 aa13.89□□□□□ -0.19
LIG1-219ENST00000600055 TRGV5A0A0B4J1U4 118 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 A0A1B0GVC2 190 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 B4DXG7 233 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 NPIPA2E9PIF3 369 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 NPIPA3F8WFD2 350 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 CCL21O00585 134 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 LDLRP01130 860 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 TPOP07202 933 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 ENDOUP21128 410 aaKnown RBP13.88□□□□□ -0.19
LIG1-219ENST00000600055 CDKN2CP42773 168 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 POU6F2P78424 691 aaPredicted RBP13.88□□□□□ -0.19
LIG1-219ENST00000600055 GUCY1A3Q02108 690 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 TOMM20Q15388 145 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.88□□□□□ -0.193e-9■□□□□ 10
LIG1-219ENST00000600055 GRAMD1BQ3KR37 738 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 APOOLQ6UXV4 268 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 NCCRP1Q6ZVX7 275 aaPredicted RBP13.88□□□□□ -0.19
LIG1-219ENST00000600055 MARCH3Q86UD3 253 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 CD163Q86VB7 1156 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 DOLPP1Q86YN1 238 aa13.88□□□□□ -0.19
LIG1-219ENST00000600055 MIER2Q8N344 545 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms