RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CPT1CQ8TCG5 803 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 CASTOR1Q8WTX7 329 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 SLC46A2Q9BY10 475 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 FXYD6Q9H0Q3 95 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 KNDC1Q76NI1 1749 aa19.36■□□□□ 0.69
UPF1-207ENST00000599848 C17orf113A0A1B0GUU1 675 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 FAM155AB1AL88 458 aaPredicted RBP19.35■□□□□ 0.69
UPF1-207ENST00000599848 TMEM233B4DJY2 109 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 LHCGRP22888 699 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 GPLD1P80108 840 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 PPA1Q15181 289 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 FAM78AQ5JUQ0 283 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 GPR139Q6DWJ6 353 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 RAB12Q6IQ22 244 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 PARS2Q7L3T8 475 aaKnown RBP19.35■□□□□ 0.69
UPF1-207ENST00000599848 NUP50Q9UKX7 468 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 FAM72CH0Y354 149 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 MAGP20916 626 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 PSMA6P60900 246 aaKnown RBP19.35■□□□□ 0.69
UPF1-207ENST00000599848 GALNT1Q10472 559 aaPredicted RBP19.35■□□□□ 0.69
UPF1-207ENST00000599848 FAM72AQ5TYM5 149 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 FAM72DQ6L9T8 149 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 FAM72BQ86X60 149 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 ZNF597Q96LX8 424 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 FAIMQ9NVQ4 179 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 ZNF224Q9NZL3 707 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 MMACHCQ9Y4U1 282 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 MRPL3P09001 348 aaKnown RBP19.35■□□□□ 0.69
UPF1-207ENST00000599848 GLULP15104 373 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 FGL1Q08830 312 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 GARNL3Q5VVW2 1013 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 NIPAL3Q6P499 406 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 KCNA7Q96RP8 456 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 MYADMQ96S97 322 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 TRNAU1APQ9NX07 287 aaKnown RBP19.35■□□□□ 0.69
UPF1-207ENST00000599848 ZNF223Q9UK11 482 aaPredicted RBP19.35■□□□□ 0.69
UPF1-207ENST00000599848 FAM26DQ5JW98 314 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 NANOGP8Q6NSW7 305 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 PIGWQ7Z7B1 504 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 ZNF761Q86XN6 746 aaPredicted RBP19.35■□□□□ 0.69
UPF1-207ENST00000599848 UBE2ZQ9H832 354 aaPredicted RBP19.35■□□□□ 0.69
UPF1-207ENST00000599848 PLEK2Q9NYT0 353 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 IL17CQ9P0M4 197 aa19.35■□□□□ 0.69
UPF1-207ENST00000599848 AJAP1Q9UKB5 411 aaPredicted RBP19.35■□□□□ 0.69
UPF1-207ENST00000599848 RGS9O75916 674 aaPredicted RBP19.34■□□□□ 0.69
UPF1-207ENST00000599848 IGHG1P01857 330 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 EN2P19622 333 aaPredicted RBP19.34■□□□□ 0.69
UPF1-207ENST00000599848 NUDT6P53370 316 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 EEF1A2Q05639 463 aaKnown RBP19.34■□□□□ 0.69
UPF1-207ENST00000599848 MAB21L1Q13394 359 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 TMEM205Q6UW68 189 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 GALNT15Q8N3T1 639 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 OR52E2Q8NGJ4 325 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 OR8K3Q8NH51 312 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 UBQLN4Q9NRR5 601 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 BTNL2Q9UIR0 455 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 CHMP24386 653 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 NPRL3Q12980 569 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 NADSYN1Q6IA69 706 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 TRIM73Q86UV7 250 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 TPRA1Q86W33 373 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 OR5AR1Q8NGP9 310 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 PAAF1Q9BRP4 392 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 RHCGQ9UBD6 479 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 AFDNP55196 1824 aaKnown RBP19.34■□□□□ 0.69
UPF1-207ENST00000599848 SLC16A8O95907 504 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 GPX6P59796 221 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 ATP6AP1Q15904 470 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 NKPD1Q17RQ9 610 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 TMEM244Q5VVB8 128 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 GPR149Q86SP6 731 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 BPHLQ86WA6 291 aaPredicted RBP19.34■□□□□ 0.69
UPF1-207ENST00000599848 MSLNLQ96KJ4 702 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 INIPQ9NRY2 104 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 C12orf71A8MTZ7 269 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 PYCR1P32322 319 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 ANKDD1AQ495B1 522 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 CEACAM19Q7Z692 300 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 TSPAN33Q86UF1 283 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 OR1J4Q8NGS1 313 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 OR5H2Q8NGV7 314 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 HCFC1R1Q9NWW0 138 aa19.34■□□□□ 0.69
UPF1-207ENST00000599848 HTRA2O43464 458 aaPredicted RBP19.33■□□□□ 0.69
UPF1-207ENST00000599848 HTR3BO95264 441 aa19.33■□□□□ 0.69
UPF1-207ENST00000599848 ATP1B3P54709 279 aa19.33■□□□□ 0.69
UPF1-207ENST00000599848 DBPQ10586 325 aaPredicted RBP19.33■□□□□ 0.69
UPF1-207ENST00000599848 RNASE10Q5GAN6 216 aaKnown RBP19.33■□□□□ 0.69
UPF1-207ENST00000599848 KCTD11Q693B1 232 aa19.33■□□□□ 0.69
UPF1-207ENST00000599848 NEIL3Q8TAT5 605 aa19.33■□□□□ 0.69
UPF1-207ENST00000599848 SLC25A44Q96H78 314 aaPredicted RBP19.33■□□□□ 0.69
UPF1-207ENST00000599848 TMEM19Q96HH6 336 aa19.33■□□□□ 0.69
UPF1-207ENST00000599848 ADAM29Q9UKF5 820 aa19.33■□□□□ 0.69
UPF1-207ENST00000599848 PRRG2O14669 202 aa19.33■□□□□ 0.69
UPF1-207ENST00000599848 FCGR2AP12318 317 aa19.33■□□□□ 0.69
UPF1-207ENST00000599848 AWAT2Q6E213 333 aa19.33■□□□□ 0.69
UPF1-207ENST00000599848 COG8Q96MW5 612 aa19.33■□□□□ 0.69
UPF1-207ENST00000599848 RPH3AQ9Y2J0 694 aaPredicted RBP19.33■□□□□ 0.69
UPF1-207ENST00000599848 ANTXRLA6NF34 631 aa19.33■□□□□ 0.68
UPF1-207ENST00000599848 CELP19835 753 aa19.33■□□□□ 0.68
UPF1-207ENST00000599848 CLDN2P57739 230 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms