RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 PLXDC2Q6UX71 529 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 TRIM46Q7Z4K8 759 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 ADGRE4PQ86SQ3 457 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 UBQLNLQ8IYU4 475 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 OR2L13Q8N349 312 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 MEIOBQ8N635 442 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 LINC01560Q8TB33 94 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 UCN2Q96RP3 112 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 IQCGQ9H095 443 aaKnown RBP8.88□□□□□ -0.99
VRK3-216ENST00000599342 CXXC4Q9H2H0 198 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 LIME1Q9H400 295 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 DSN1Q9H410 356 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 GLIPR2Q9H4G4 154 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 PTGES2Q9H7Z7 377 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 C3orf14Q9HBI5 128 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 GALNT8Q9NY28 637 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 TAS2R7Q9NYW3 318 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 PACSIN3Q9UKS6 424 aa8.88□□□□□ -0.99
VRK3-216ENST00000599342 C19orf53Q9UNZ5 99 aaPredicted RBP8.88□□□□□ -0.99
VRK3-216ENST00000599342 F8P00451 2351 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 FREM3P0C091 2139 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 KIAA1549Q9HCM3 1950 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 SLC22A20A6NK97 555 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 SLC28A1O00337 649 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 CASKO14936 926 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 RGS14O43566 566 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 HCRTR2O43614 444 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 PLIN3O60664 434 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 SEC22BO75396 215 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 SMNDC1O75940 238 aaKnown RBP eCLIP8.87□□□□□ -0.99
VRK3-216ENST00000599342 KCNH1O95259 989 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 CHEK2O96017 543 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 RAF1P04049 648 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 SHBGP04278 402 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 PEPDP12955 493 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 CPA3P15088 417 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 HK1P19367 917 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 CRHR1P34998 444 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 GPC1P35052 558 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 EEFSECP57772 596 aaKnown RBP8.87□□□□□ -0.99
VRK3-216ENST00000599342 HSPB3Q12988 150 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 KEAP1Q14145 624 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 BCL2A1Q16548 175 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 LIPMQ5VYY2 423 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 CLEC6AQ6EIG7 209 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 OR2A2Q6IF42 318 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 PAMR1Q6UXH9 720 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 SZRD1Q7Z422 152 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 CAMKMTQ7Z624 323 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 FADS6Q8N9I5 356 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 EIF1ADQ8N9N8 165 aaKnown RBP8.87□□□□□ -0.99
VRK3-216ENST00000599342 OR2M3Q8NG83 312 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 ZFP28Q8NHY6 868 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 RNF138Q8WVD3 245 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 TRIM44Q96DX7 344 aaPredicted RBP8.87□□□□□ -0.99
VRK3-216ENST00000599342 ELP4Q96EB1 424 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 METTL2AQ96IZ6 378 aaKnown RBP8.87□□□□□ -0.99
VRK3-216ENST00000599342 AMDHD1Q96NU7 426 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 DACH2Q96NX9 599 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 ALPK1Q96QP1 1244 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 G6PC3Q9BUM1 346 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 TBL1XR1Q9BZK7 514 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 EQTNQ9NQ60 294 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 OXSMQ9NWU1 459 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 FAM120CQ9NX05 1096 aaKnown RBP8.87□□□□□ -0.99
VRK3-216ENST00000599342 MED11Q9P086 117 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 NDRG3Q9UGV2 375 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 FIS1Q9Y3D6 152 aa8.87□□□□□ -0.99
VRK3-216ENST00000599342 UQCRHLA0A096LP55 91 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 A0A1W2PNV4 684 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 SH3D21A4FU49 640 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 TTC36A6NLP5 189 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 C17orf51A8MQB3 221 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 H3BML4 177 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 LINC01387J3KSC0 135 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 PDPK1O15530 556 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 SEC14L5O43304 696 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 FADS1O60427 444 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 ZIC3O60481 467 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 PSMG1O95456 288 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 IL33O95760 270 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 CRHP06850 196 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 IFI6P09912 130 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 NEFHP12036 1026 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 KRT4P19013 534 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 PRPH2P23942 346 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 PRSS53Q2L4Q9 553 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 VPS26BQ4G0F5 336 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 TDRPQ86YL5 185 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 TGIF2LYQ8IUE0 185 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 CNEP1R1Q8N9A8 125 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.86□□□□□ -0.99
VRK3-216ENST00000599342 EPS8L3Q8TE67 593 aaKnown RBP8.86□□□□□ -0.99
VRK3-216ENST00000599342 SMPDL3BQ92485 455 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 GFM2Q969S9 779 aaKnown RBP8.86□□□□□ -0.99
VRK3-216ENST00000599342 PPCDCQ96CD2 204 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 MBD6Q96DN6 1003 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 ZBED6CLQ96FA7 236 aaPredicted RBP8.86□□□□□ -0.99
VRK3-216ENST00000599342 CCT7Q99832 543 aa8.86□□□□□ -0.99
VRK3-216ENST00000599342 PIGQQ9BRB3 760 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms