RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 FAM234BA2RU67 622 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 MBD3L4A6NDZ8 208 aaPredicted RBP12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 MBD3L5A6NJ08 208 aaPredicted RBP12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 WASHC1A8K0Z3 465 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 HSPB2A8KAH6 182 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 CDK2AP1O14519 115 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 ITGA10O75578 1167 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 LRATO95237 230 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 NR2F6P10588 404 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 PIK3R1P27986 724 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 TLX1P31314 330 aaPredicted RBP12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 BUD31P41223 144 aaPredicted RBP12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 MAN2A2P49641 1150 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 HNRNPFP52597 415 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 HSPB2Q16082 182 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 SLC48A1Q6P1K1 146 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 BLOC1S3Q6QNY0 202 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 PRSS57Q6UWY2 283 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 TRILQ7L0X0 811 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 R3HCC1LQ7Z5L2 792 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 SLC22A16Q86VW1 577 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 KIF18BQ86Y91 864 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 TREML1Q86YW5 311 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 ZNF595Q8IYB9 648 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 TSPEARQ8WU66 669 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 PIGTQ969N2 578 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 GFM2Q969S9 779 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 TBC1D20Q96BZ9 403 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 CCL19Q99731 98 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 LDAHQ9H6V9 325 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 RPF2Q9H7B2 306 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 ARMCX1Q9P291 453 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 SPACA6W5XKT8 324 aa12.73□□□□□ -0.37
SHKBP1-218ENST00000598907 ARHGAP21Q5T5U3 1957 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 TRBV11-1A0A0K0K1C0 115 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 A8MUA0 341 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 EEF1E1-BLOC1S5C9J1V9 151 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 AQP7O14520 342 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 EEF1E1O43324 174 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 AKAP10O43572 662 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 SCN2BO60939 215 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 PRKRAO75569 313 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 FHP07954 510 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 HPCAL1P37235 193 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 FRKP42685 505 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 POLR2JP52435 117 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 PHC1P78364 1004 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 RCAN2Q14206 197 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 MPEG1Q2M385 716 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 DPY19L1Q2PZI1 675 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 FBXL19-AS1Q494R0 122 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 AGKQ53H12 422 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 ZNF385BQ569K4 471 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 OR52E8Q6IFG1 317 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 C6orf89Q6UWU4 347 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 SEM1Q6ZVN7 128 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 SCUBE1Q8IWY4 988 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 FAM109AQ8N4B1 249 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 TMEM251Q8N6I4 163 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 FAM47BQ8NA70 645 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 MAPK1IP1LQ8NDC0 245 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 TNIP2Q8NFZ5 429 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 OR7A2PQ8NGA2 310 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 OR8J2Q8NGG1 315 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 CDC26Q8NHZ8 85 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 TANKQ92844 425 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 ANKRD9Q96BM1 317 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 SARAFQ96BY9 339 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 ERP27Q96DN0 273 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 PIP5K1AQ99755 562 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 UBTD1Q9HAC8 227 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 WDR41Q9HAD4 459 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 CCDC167Q9P0B6 97 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 SPRR3Q9UBC9 169 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 FOXD3Q9UJU5 478 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 CLDN16Q9Y5I7 305 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 CAPN7Q9Y6W3 813 aa12.72□□□□□ -0.37
SHKBP1-218ENST00000598907 GLOD5A6NK44 160 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 KDM4EB2RXH2 506 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 C9JVG2 144 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 CLDN4O14493 209 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 CTNSO60931 367 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 IGHG3P01860 377 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 IL6P05231 212 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 LAMP1P11279 417 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 COX7A2P14406 83 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 PRDX6P30041 224 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 AGFG1P52594 562 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 HSD17B7P56937 341 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 IGLV3-21P80748 117 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 SPANXN4Q5MJ08 99 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 CPTPQ5TA50 214 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 TRPM8Q7Z2W7 1104 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 NATD1Q8N6N6 113 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 PLPP5Q8NEB5 264 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 PPCDCQ96CD2 204 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 ZNF681Q96N22 645 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 ZBTB18Q99592 522 aa12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 PRPF18Q99633 342 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-218ENST00000598907 BHLHE41Q9C0J9 482 aaPredicted RBP12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms